# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fx7A 230 3.673 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2fjtA 182 4.551 2acaA 189 4.910 d.63.1.2 126545 2h3jA 75 5.127 1z85A 234 9.536 1bi0 226 10.44 2gcxA 75 11.35 1h0hA 977 14.23 b.52.2.2,c.81.1.1 76435,76436 1vcdA 126 17.07 d.113.1.1 119970 2he4A 90 17.72 1vkbA 161 19.90 d.269.1.1 108643 2pbtA 134 21.50 2pwyA 258 23.39 1lplA 95 23.64 b.34.10.1 74173 1npyA 271 24.38 c.2.1.7,c.58.1.5 85995,85996 1ss4A 153 24.74 d.32.1.6 105976 1musA 477 25.82 c.55.3.4 79494 1g9oA 91 26.80 b.36.1.1 60400 2pjhB 193 27.00 1zylA 328 27.87 2r9zA 463 30.25 2bklA 695 31.70 2eisA 133 33.61 1xjo 284 34.49 1kqfA 1015 35.51 b.52.2.2,c.81.1.1 72871,72872 2q6kA 283 35.84 1aw8B 91 36.93 2covD 104 37.51 2pn0A 141 37.96 1vpvA 300 38.41 c.119.1.1 113975 1vhsA 175 41.29 d.108.1.1 100698 1yemA 179 41.50 d.63.1.2 116646 2e7zA 727 42.35 2dc4A 165 42.44 2bfgA 503 43.72 b.71.1.2,c.1.8.3 128423,128424 2zbvA 263 45.70 1wlfA 179 45.91 d.31.1.1,b.52.2.3 109396,109397 1pqhA 143 46.07 b.52.2.1 95017 1muhA 481 46.17 c.55.3.4 79485 2gqwA 408 46.31 1tovA 98 46.91 b.34.10.1 107179 1j5wA 298 47.00 d.104.1.1 71589 1g8kA 825 47.51 b.52.2.2,c.81.1.1 26920,35328 1a62A 130 49.09 a.140.3.1,b.40.4.5 64708,64709 2dyiA 162 49.94 1qw1A 121 51.69 1yd9A 193 52.23 c.50.1.2 122976 1a97A 148 52.91 c.61.1.1 34023 1bymA 97 53.15 b.34.1.2 24458 2ddzA 190 53.18 1cz4A 185 54.11 b.52.2.3,d.31.1.1 26934,38468 2cw5A 255 54.26 1ryjA 70 54.73 d.15.3.2 98104 1k8rB 110 54.79 d.15.1.5 72180 1uheA 97 55.42 1v7lA 163 56.61 c.8.2.1 113562 2qg8A 163 57.12 1z9fA 153 57.73 2ougA 162 57.79 3grs 478 60.13 2ocsA 88 62.80 3bfmA 235 63.95 2egvA 229 64.31 1yqzA 438 66.05 2e55A 208 66.38 1ep2B 261 69.55 b.43.4.2,c.25.1.3 25666,31556 1qxhA 167 70.15 c.47.1.10 96528 2o5aA 125 70.31 1zvgA 66 70.37 1a62 130 71.03 1p5vA 235 71.93 b.1.11.1,b.7.2.1 87812,87813 1zr5A 214 72.17 c.50.1.2 125525 1qq9A 284 72.91 c.56.5.4 33841 1dd9A 338 74.53 e.13.1.1 43254 2ooiA 162 74.81 1d7yA 408 75.65 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2eq6A 464 76.75 2vi7A 177 80.15 1vc3B 97 81.69 1j77A 209 82.26 a.132.1.2 62674 1nulA 152 82.75 c.61.1.1 34011 1gesA 450 85.48 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1nekA 588 86.31 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2pa1A 87 87.31 2avxA 171 88.07 1jb3A 131 88.31 b.40.3.2 62833 1tfzA 424 88.33 d.32.1.3,d.32.1.3 106886,106887 1q7lA 198 88.84 c.56.5.4 96044 2hljA 157 89.17 d.38.1.1 136570 2pz4A 239 89.56