# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pmjX	185	4.002	b.18.1.18	104194
1ppjB	439	5.052	d.185.1.1,d.185.1.1	104254,104255
1pmhX	185	7.122	b.18.1.18	104193
1q2bA	434	8.393	b.29.1.10	95624
1a0tP	413	9.281	f.4.3.2	43794
2g8sA	353	10.61		
2z2nA	299	11.45		
1m4vA	204	17.14	b.40.2.2,d.15.6.1	74459,74460
1cfbA	205	17.74	b.1.2.1,b.1.2.1	21991,21992
2q9uA	414	20.11		
2dpyA	438	20.85		
1xynA	178	24.95	b.29.1.11	24322
1d9cA	121	28.17	a.26.1.3	16901
1q7fA	286	29.22	b.68.9.1	96036
1xnkA	196	29.34	b.29.1.11	122195
2dbjA	124	30.25		
1xsoA	150	30.62	b.1.8.1	22273
1ca1A	370	32.11	a.124.1.1,b.12.1.3	19340,23648
1oh4A	179	33.91	b.18.1.18	92978
1fyhB	229	34.28	b.1.2.1,b.1.2.1	22055,22056
1pvxA	194	35.37	b.29.1.11	24341
1f6fB	210	38.35	b.1.2.1,b.1.2.1	22033,22034
2nlvA	112	39.85	d.326.1.1	138362
2fvgA	340	41.76	b.49.3.1,c.56.5.4	134201,134202
1fna	93	42.26		
2yyoA	171	42.78		
1lfcA	25	43.60	j.3.1.5	46074
1ynaA	194	44.02	b.29.1.11	24335
1ppjA	446	44.17	d.185.1.1,d.185.1.1	104252,104253
1qhoA	686	45.50	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21844,22513,27751,28738
1bj7	156	46.96		
2p4oA	306	47.82		
2fcrA	173	48.34	c.23.5.1	31151
1v3yA	192	49.61	d.167.1.1	113508
1u0tA	307	50.94	e.52.1.1	107567
3btxA	204	51.69		
2h41A	95	52.65		
2uvkA	357	53.54		
1rwiA	270	54.34	b.68.9.1	97987
1f1gA	154	55.51	b.1.8.1	76153
1ppjE	196	55.58	b.33.1.1,f.23.12.1	104260,104261
2r7eA	742	56.94		
1gpiA	431	57.56	b.29.1.10	65450
1h3gA	601	61.14	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
1gx3A	284	62.18	d.3.1.5	70678
1pkoA	139	64.17	b.1.1.1	88147
2b9kA	47	64.32		
1hp1A	516	64.67	d.114.1.1,d.159.1.2	70976,70977
1ew4A	106	65.35	d.82.2.1	40023
1e5pA	151	66.75	b.60.1.1	59272
1a22B	238	66.79	b.1.2.1,b.1.2.1	22003,22004
1gm6A	175	67.37	b.60.1.1	70272
1v04A	355	69.88	b.68.6.2	100240
1gjwA	637	71.87	b.71.1.1,c.1.8.1	60582,60583
2a38A	194	72.75		
2rb8A	104	74.51		
1i07A	60	75.33	b.34.2.1	61477
1pjxA	314	75.51	b.68.6.1	104167
1icfI	65	77.07	g.28.1.1	44958
1xiwB	79	77.27	b.1.1.4	115368
2qq9A	226	79.68		
2ghsA	326	80.53	b.68.6.1	135209
3cnwA	148	80.63		
1wj9A	211	82.30	d.58.53.1,d.58.53.1	114694,114695
1w4tA	299	82.87	d.3.1.5	120639
1yt5A	258	86.76		
2dtrA	226	87.73	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2yv8A	164	88.66		
2an1A	292	89.30