# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fcrA	173	2.475	c.23.5.1	31151
2z2nA	299	2.612		
1ppjB	439	3.665	d.185.1.1,d.185.1.1	104254,104255
1a0tP	413	6.027	f.4.3.2	43794
1oh4A	179	9.422	b.18.1.18	92978
1q7fA	286	10.05	b.68.9.1	96036
1rwiA	270	10.86	b.68.9.1	97987
1pmjX	185	15.45	b.18.1.18	104194
2p4oA	306	16.38		
1d9cA	121	20.37	a.26.1.3	16901
1pmhX	185	23.61	b.18.1.18	104193
1bhpA	45	24.46	g.13.1.1	44626
1ppjE	196	25.45	b.33.1.1,f.23.12.1	104260,104261
1cfbA	205	25.73	b.1.2.1,b.1.2.1	21991,21992
1bhp	45	26.23		
2g8sA	353	27.99		
1q2bA	434	28.39	b.29.1.10	95624
2dpyA	438	29.90		
1ag9A	175	30.75	c.23.5.1	31178
1gx3A	284	31.64	d.3.1.5	70678
1hp1A	516	31.71	d.114.1.1,d.159.1.2	70976,70977
2cx5A	158	31.71		
2bmvA	164	32.06		
2q9uA	414	33.35		
1xsoA	150	37.71	b.1.8.1	22273
1m4vA	204	38.78	b.40.2.2,d.15.6.1	74459,74460
1lfcA	25	42.40	j.3.1.5	46074
1ppjA	446	43.27	d.185.1.1,d.185.1.1	104252,104253
2f1nA	262	44.32	d.151.1.1	132782
1pkoA	139	45.54	b.1.1.1	88147
2yyoA	171	49.69		
1pjxA	314	50.52	b.68.6.1	104167
1e5pA	151	51.76	b.60.1.1	59272
1xiwB	79	53.04	b.1.1.4	115368
1wj9A	211	54.61	d.58.53.1,d.58.53.1	114694,114695
1xynA	178	55.31	b.29.1.11	24322
1t0yA	122	57.01	d.15.1.1	99066
1f6fB	210	59.41	b.1.2.1,b.1.2.1	22033,22034
1vflA	356	59.59	c.1.9.1	120041
1oboA	169	61.29	c.23.5.1	86776
1ew4A	106	62.05	d.82.2.1	40023
2z0xA	158	63.52		
1v3yA	192	65.23	d.167.1.1	113508
2avxA	171	65.32		
2uvkA	357	65.35		
2a38A	194	65.43		
1bhuA	102	65.45	b.11.1.3	23631
1icfI	65	68.45	g.28.1.1	44958
2dbjA	124	69.44		
2il5A	171	69.48		
1fna	93	71.57		
1zd0A	150	72.59	d.329.1.1	124927
2pcsA	162	74.21		
2ghsA	326	75.44	b.68.6.1	135209
1w4tA	299	76.14	d.3.1.5	120639
1gpiA	431	76.77	b.29.1.10	65450
2qq9A	226	77.36		
2ci9A	102	78.05		
1h3gA	601	79.28	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
1vecA	206	81.01	c.37.1.19	100575
1rfs	139	82.51		
2ciaA	102	84.17		
1f1gA	154	84.41	b.1.8.1	76153
1v04A	355	85.73	b.68.6.2	100240
1pvxA	194	86.14	b.29.1.11	24341