# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z2nA	299	4.488		
2fcrA	173	4.673	c.23.5.1	31151
1a0tP	413	4.698	f.4.3.2	43794
1ppjB	439	5.516	d.185.1.1,d.185.1.1	104254,104255
1q7fA	286	8.277	b.68.9.1	96036
1d9cA	121	14.34	a.26.1.3	16901
1oh4A	179	19.07	b.18.1.18	92978
2p4oA	306	19.32		
1cfbA	205	19.61	b.1.2.1,b.1.2.1	21991,21992
1pmjX	185	19.90	b.18.1.18	104194
1gx3A	284	20.20	d.3.1.5	70678
2g8sA	353	20.61		
1q2bA	434	20.82	b.29.1.10	95624
1rwiA	270	21.15	b.68.9.1	97987
1bhpA	45	26.24	g.13.1.1	44626
2q9uA	414	27.04		
1hp1A	516	27.77	d.114.1.1,d.159.1.2	70976,70977
1bhp	45	28.11		
1pmhX	185	28.21	b.18.1.18	104193
1lfcA	25	30.77	j.3.1.5	46074
1ppjE	196	32.15	b.33.1.1,f.23.12.1	104260,104261
1ag9A	175	37.75	c.23.5.1	31178
2bmvA	164	41.26		
1pkoA	139	42.80	b.1.1.1	88147
2dpyA	438	44.25		
1f6fB	210	46.03	b.1.2.1,b.1.2.1	22033,22034
1bhuA	102	47.69	b.11.1.3	23631
1v3yA	192	48.09	d.167.1.1	113508
1xynA	178	48.60	b.29.1.11	24322
1xsoA	150	50.21	b.1.8.1	22273
1xiwB	79	51.51	b.1.1.4	115368
1y8qA	346	51.55		
1fna	93	51.80		
2qq9A	226	52.05		
2fvgA	340	52.56	b.49.3.1,c.56.5.4	134201,134202
2avxA	171	54.45		
1pvxA	194	56.70	b.29.1.11	24341
1m4vA	204	58.54	b.40.2.2,d.15.6.1	74459,74460
2f1nA	262	58.69	d.151.1.1	132782
1t0yA	122	60.18	d.15.1.1	99066
1h3gA	601	60.33	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
1wj9A	211	60.49	d.58.53.1,d.58.53.1	114694,114695
2dbjA	124	60.53		
1xnkA	196	62.46	b.29.1.11	122195
1vecA	206	64.12	c.37.1.19	100575
1zd0A	150	66.06	d.329.1.1	124927
1icfI	65	67.32	g.28.1.1	44958
1ppjA	446	68.38	d.185.1.1,d.185.1.1	104252,104253
1gpiA	431	68.40	b.29.1.10	65450
1v04A	355	68.67	b.68.6.2	100240
3bh0A	315	68.92		
2yyoA	171	69.17		
2pcsA	162	69.45		
1ar61	302	71.99		
2il5A	171	73.16		
2geyA	158	73.33		
2j5wA	1065	74.28	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	138067,138068,138069,138070,138071
2a38A	194	74.72		
2uv0E	175	75.90		
2an1A	292	78.69		
1qdeA	224	83.08	c.37.1.19	32410
1pjxA	314	83.60	b.68.6.1	104167
1e5pA	151	83.76	b.60.1.1	59272
1t6nA	220	84.46	c.37.1.19	106576
2dtrA	226	84.97	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fyhB	229	85.49	b.1.2.1,b.1.2.1	22055,22056
1an8	208	86.72		
1u0tA	307	86.97	e.52.1.1	107567
2owpA	129	88.22