# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a0tP	413	5.663	f.4.3.2	43794
1ppjB	439	5.785	d.185.1.1,d.185.1.1	104254,104255
2z2nA	299	6.266		
2fcrA	173	6.277	c.23.5.1	31151
1q7fA	286	10.24	b.68.9.1	96036
1bhpA	45	16.51	g.13.1.1	44626
1cfbA	205	17.41	b.1.2.1,b.1.2.1	21991,21992
1bhp	45	17.82		
1hp1A	516	20.05	d.114.1.1,d.159.1.2	70976,70977
1q2bA	434	20.10	b.29.1.10	95624
1d9cA	121	21.60	a.26.1.3	16901
1pmjX	185	22.30	b.18.1.18	104194
1gx3A	284	24.23	d.3.1.5	70678
1oh4A	179	25.99	b.18.1.18	92978
2p4oA	306	26.29		
2g8sA	353	30.61		
2q9uA	414	31.61		
1rwiA	270	32.84	b.68.9.1	97987
1pmhX	185	33.52	b.18.1.18	104193
1lfcA	25	34.69	j.3.1.5	46074
2dpyA	438	36.01		
2f1nA	262	41.78	d.151.1.1	132782
1ag9A	175	42.21	c.23.5.1	31178
1ppjE	196	43.49	b.33.1.1,f.23.12.1	104260,104261
1f6fB	210	43.76	b.1.2.1,b.1.2.1	22033,22034
2bmvA	164	44.33		
1xynA	178	47.03	b.29.1.11	24322
2dbjA	124	51.63		
1zd0A	150	52.21	d.329.1.1	124927
2qq9A	226	53.43		
2avxA	171	54.05		
1fna	93	54.78		
1xsoA	150	55.88	b.1.8.1	22273
1vecA	206	56.83	c.37.1.19	100575
1v3yA	192	57.53	d.167.1.1	113508
1pkoA	139	58.84	b.1.1.1	88147
1m4vA	204	59.49	b.40.2.2,d.15.6.1	74459,74460
2uv0E	175	60.53		
1ar61	302	61.54		
1wj9A	211	61.60	d.58.53.1,d.58.53.1	114694,114695
3bh0A	315	63.35		
1wlmA	151	63.85	a.39.1.11	121008
1y8qA	346	63.96		
1pvxA	194	65.41	b.29.1.11	24341
1ppjA	446	66.40	d.185.1.1,d.185.1.1	104252,104253
1xiwB	79	66.55	b.1.1.4	115368
1bhuA	102	66.68	b.11.1.3	23631
1t0yA	122	67.01	d.15.1.1	99066
1qdeA	224	67.04	c.37.1.19	32410
2fvgA	340	68.51	b.49.3.1,c.56.5.4	134201,134202
1xnkA	196	68.58	b.29.1.11	122195
2il5A	171	69.97		
2pcsA	162	70.15		
1v04A	355	71.26	b.68.6.2	100240
1icfI	65	71.33	g.28.1.1	44958
1gpiA	431	71.45	b.29.1.10	65450
2hrgA	496	71.96		
2geyA	158	72.32		
2a38A	194	74.46		
1nmuB	104	75.50	d.79.3.1	80666
2yyoA	171	76.53		
2owpA	129	76.54		
1vflA	356	79.29	c.1.9.1	120041
3borA	237	83.99		
1fyhB	229	86.22	b.1.2.1,b.1.2.1	22055,22056
2j5wA	1065	88.95	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	138067,138068,138069,138070,138071
2dtrA	226	89.35	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450