# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1zu0A 529 0.6126 2z2nA 299 0.6718 2z8lA 208 1.522 1j1tA 233 2.221 b.29.1.18 90771 2p4oA 306 3.423 1m4vA 204 4.225 b.40.2.2,d.15.6.1 74459,74460 1cfbA 205 4.334 b.1.2.1,b.1.2.1 21991,21992 2uvkA 357 4.570 1jofA 365 5.064 b.69.10.1 71775 2q8xA 331 5.470 1q2bA 434 7.442 b.29.1.10 95624 3b50A 310 7.823 1nbaA 264 8.155 c.33.1.3 31753 1kblA 873 8.611 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1v33A 366 8.865 d.264.1.1 100278 1nrwA 288 14.80 c.108.1.10 86128 3b5lB 198 17.05 1vkmA 297 17.61 c.138.1.1 108670 1ur4A 399 18.56 c.1.8.3 113402 1cfb 205 20.15 1ey4A 149 22.31 b.40.1.1 24815 2piaA 321 23.44 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1chkA 238 24.66 d.2.1.7 36999 1hfuA 503 27.32 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1oh4A 179 27.85 b.18.1.18 92978 2aq2B 237 28.94 b.40.2.2,d.15.6.1 127146,127147 2hesX 330 29.05 2h41A 95 30.31 1f6fB 210 30.67 b.1.2.1,b.1.2.1 22033,22034 2d5lA 706 31.01 1f20A 435 32.01 b.43.4.1,c.25.1.4 64932,64933 3borA 237 33.54 1lkdA 297 33.59 d.32.1.3,d.32.1.3 78059,78060 1mfmA 153 34.57 b.1.8.1 22246 1uh4A 637 35.04 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2r6iA 284 35.65 2fp8A 322 36.49 2p10A 286 37.89 2pcsA 162 39.25 1bquA 215 39.60 b.1.2.1,b.1.2.1 22066,22067 1fyhB 229 40.60 b.1.2.1,b.1.2.1 22055,22056 1olzA 663 41.47 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1gycA 499 42.48 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2ieaA 886 42.71 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2pia 321 43.50 1z9pA 155 45.57 2glxA 332 45.71 1qwyA 291 45.79 b.84.3.2 96509 1qhlA 227 45.83 c.37.1.12 32382 1tqyA 424 46.09 c.95.1.1,c.95.1.1 107245,107246 1v3yA 192 47.38 d.167.1.1 113508 1d9cA 121 51.22 a.26.1.3 16901 2gp5A 349 51.53 1rxwA 336 51.60 a.60.7.1,c.120.1.2 98059,98060 1a58A 177 52.05 b.62.1.1 27495 1rfs 139 54.08 2vduE 254 54.42 1h2wA 710 54.81 b.69.7.1,c.69.1.4 76596,76597 2ordA 397 55.27 2gdrA 202 55.89 2e7uA 424 56.89 1o4yA 288 56.97 b.29.1.2 92473 3btxA 204 57.63 2ghsA 326 58.08 b.68.6.1 135209 1gnlA 544 58.57 e.26.1.1 70287 1q7fA 286 59.96 b.68.9.1 96036 2hrgA 496 60.13 2qe8A 343 60.14 1wp5A 323 61.12 b.68.10.1 114780 2oap1 511 61.21 1wueA 386 61.29 c.1.11.2,d.54.1.1 114892,114893 2g1iA 563 61.49 1erjA 393 61.73 b.69.4.1 27660 2geeA 203 61.94 1zd0A 150 63.10 d.329.1.1 124927 1vm9A 111 63.49 b.33.1.1 108886 2ar5A 121 63.50 1gx3A 284 64.94 d.3.1.5 70678 2rikA 284 66.02 3d48R 211 66.43 2hp1A 432 66.65 1wj9A 211 67.47 d.58.53.1,d.58.53.1 114694,114695 1rieA 129 67.57 b.33.1.1 24427 1mi4A 427 69.90 d.68.2.2 79141 1wisA 124 70.31 b.1.2.1 120975 2qfeA 148 71.47 2yyoA 171 71.58 2yv8A 164 71.86 1xynA 178 73.00 b.29.1.11 24322 3c6fA 153 73.71 2bjfA 329 74.25 1icfI 65 74.69 g.28.1.1 44958 2eutA 294 76.18 a.93.1.1 132407 2ox0A 381 77.08 2ef0A 301 77.17 1ynaA 194 78.82 b.29.1.11 24335 2cx5A 158 79.69 2a38A 194 80.08 1xuvA 178 80.21 d.129.3.5 116069 1qx4A 274 80.32 b.43.4.2,c.25.1.1 104624,104625 2hqyA 305 82.52 2qgmA 445 84.19 2pceA 386 85.61 2guyA 478 85.75 b.71.1.1,c.1.8.1 135754,135755 1w4rA 195 86.75 1itvA 195 88.31 b.66.1.1 76791 2ccmA 191 88.94 2yvwA 425 89.05 1fna 93 89.17 1ppjB 439 89.61 d.185.1.1,d.185.1.1 104254,104255 1rwiA 270 89.77 b.68.9.1 97987 1jsdB 176 89.89 h.3.1.1 63259