# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fcrA	173	4.382	c.23.5.1	31151
1a0tP	413	5.893	f.4.3.2	43794
1ppjB	439	7.091	d.185.1.1,d.185.1.1	104254,104255
2z2nA	299	12.06		
1q7fA	286	12.87	b.68.9.1	96036
2q9uA	414	13.27		
1d9cA	121	16.03	a.26.1.3	16901
1pmjX	185	17.45	b.18.1.18	104194
2p4oA	306	19.88		
1ag9A	175	21.67	c.23.5.1	31178
2f1nA	262	26.08	d.151.1.1	132782
1pmhX	185	28.80	b.18.1.18	104193
1lfcA	25	31.39	j.3.1.5	46074
1v3yA	192	31.64	d.167.1.1	113508
1bhpA	45	31.82	g.13.1.1	44626
1bhp	45	34.98		
1oh4A	179	35.40	b.18.1.18	92978
1bhuA	102	36.39	b.11.1.3	23631
2dpyA	438	36.94		
1q2bA	434	37.14	b.29.1.10	95624
1cfbA	205	38.64	b.1.2.1,b.1.2.1	21991,21992
2qq9A	226	38.69		
1xsoA	150	39.69	b.1.8.1	22273
1m4vA	204	40.49	b.40.2.2,d.15.6.1	74459,74460
1pkoA	139	43.16	b.1.1.1	88147
2il5A	171	45.09		
1zd0A	150	48.09	d.329.1.1	124927
2avxA	171	53.92		
1f6fB	210	55.05	b.1.2.1,b.1.2.1	22033,22034
1gx3A	284	55.83	d.3.1.5	70678
1an8	208	56.21		
1ppjE	196	58.93	b.33.1.1,f.23.12.1	104260,104261
1nmuB	104	60.62	d.79.3.1	80666
2fvgA	340	60.62	b.49.3.1,c.56.5.4	134201,134202
1hp1A	516	60.64	d.114.1.1,d.159.1.2	70976,70977
1xynA	178	61.08	b.29.1.11	24322
1oboA	169	61.83	c.23.5.1	86776
1yovA	537	62.83	c.111.1.2	123785
1icfI	65	64.04	g.28.1.1	44958
1y8qA	346	64.33		
2ghsA	326	66.17	b.68.6.1	135209
2uv0E	175	66.21		
1xnkA	196	67.17	b.29.1.11	122195
1f1gA	154	67.90	b.1.8.1	76153
1wlmA	151	69.60	a.39.1.11	121008
1rwiA	270	73.03	b.68.9.1	97987
2a38A	194	74.20		
2hrgA	496	75.48		
2bmvA	164	77.69		
2owpA	129	79.32		
2dtrA	226	81.85	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fna	93	82.36		
1wj9A	211	84.61	d.58.53.1,d.58.53.1	114694,114695
2qt6A	498	87.95		
1f20A	435	88.96	b.43.4.1,c.25.1.4	64932,64933