# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fcrA	173	2.364	c.23.5.1	31151
1ppjB	439	5.403	d.185.1.1,d.185.1.1	104254,104255
2z2nA	299	6.248		
1a0tP	413	9.241	f.4.3.2	43794
1pmjX	185	12.95	b.18.1.18	104194
2q9uA	414	16.41		
1pmhX	185	17.58	b.18.1.18	104193
1oh4A	179	18.85	b.18.1.18	92978
1d9cA	121	18.92	a.26.1.3	16901
1gx3A	284	20.02	d.3.1.5	70678
2dpyA	438	21.07		
1q7fA	286	21.32	b.68.9.1	96036
1cfbA	205	24.30	b.1.2.1,b.1.2.1	21991,21992
1lfcA	25	26.15	j.3.1.5	46074
1m4vA	204	28.65	b.40.2.2,d.15.6.1	74459,74460
1ag9A	175	28.81	c.23.5.1	31178
1hp1A	516	29.13	d.114.1.1,d.159.1.2	70976,70977
1xsoA	150	29.34	b.1.8.1	22273
1q2bA	434	29.88	b.29.1.10	95624
2p4oA	306	32.24		
1bhpA	45	32.26	g.13.1.1	44626
2uvkA	357	34.32		
1pkoA	139	35.37	b.1.1.1	88147
1bhp	45	35.53		
1v3yA	192	41.43	d.167.1.1	113508
1nmuB	104	42.01	d.79.3.1	80666
2pcsA	162	43.89		
1rwiA	270	44.14	b.68.9.1	97987
2avxA	171	45.99		
1bhuA	102	48.52	b.11.1.3	23631
1f6fB	210	52.10	b.1.2.1,b.1.2.1	22033,22034
2dbjA	124	54.20		
1ppjE	196	54.33	b.33.1.1,f.23.12.1	104260,104261
1pjxA	314	56.20	b.68.6.1	104167
1an8	208	58.28		
2il5A	171	59.55		
1vflA	356	60.44	c.1.9.1	120041
1bj7	156	60.54		
1xynA	178	61.76	b.29.1.11	24322
2a38A	194	61.80		
2fvgA	340	61.93	b.49.3.1,c.56.5.4	134201,134202
2qq9A	226	62.45		
2j5wA	1065	63.05	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	138067,138068,138069,138070,138071
1oboA	169	64.09	c.23.5.1	86776
1f1gA	154	65.45	b.1.8.1	76153
1fna	93	65.85		
1t0yA	122	66.28	d.15.1.1	99066
2hrgA	496	66.94		
2g8sA	353	68.91		
2f1nA	262	71.87	d.151.1.1	132782
1wj9A	211	73.46	d.58.53.1,d.58.53.1	114694,114695
2uv0E	175	76.86		
1qhoA	686	77.15	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21844,22513,27751,28738
1xnkA	196	78.44	b.29.1.11	122195
2oap1	511	79.14		
3bmvA	683	79.19		
1ppjA	446	79.24	d.185.1.1,d.185.1.1	104252,104253
1gpiA	431	80.49	b.29.1.10	65450
1e6yB	433	81.89	a.89.1.1,d.58.31.2	18535,39453
1vk1A	242	81.91	d.268.1.2	108634
1hbnB	442	83.35	a.89.1.1,d.58.31.2	60900,60901
2ghsA	326	83.86	b.68.6.1	135209
2dtrA	226	85.52	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1gm6A	175	86.69	b.60.1.1	70272
1e5pA	151	88.41	b.60.1.1	59272
2bmvA	164	89.84