# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1fyhB	229	9.047	b.1.2.1,b.1.2.1	22055,22056
1bhpA	45	14.63	g.13.1.1	44626
1cfbA	205	15.66	b.1.2.1,b.1.2.1	21991,21992
1bhp	45	15.86		
1q8cA	151	20.45	a.79.1.2	96202
1ppjB	439	27.99	d.185.1.1,d.185.1.1	104254,104255
1fna	93	28.99		
1gh9A	71	29.75	g.41.6.1	45266
2pcsA	162	31.61		
1pmjX	185	32.06	b.18.1.18	104194
2idxA	196	34.42		
1pkoA	139	35.28	b.1.1.1	88147
2btiA	63	38.04		
1q0uA	219	43.63	c.37.1.19	95512
1uc2A	481	43.95	d.261.1.1	99161
2dbjA	124	43.96		
1vecA	206	44.74	c.37.1.19	100575
2qsfX	171	46.46		
2e6cA	244	47.09		
1t6nA	220	48.86	c.37.1.19	106576
1pmhX	185	49.90	b.18.1.18	104193
1ia9A	280	53.37	d.144.1.5	62113
1orc	71	54.79		
1ra9A	159	58.09	c.71.1.1	34820
2h41A	95	58.59		
3borA	237	63.41		
1df7A	159	63.83	c.71.1.1	34885
2rb8A	104	66.92		
1f6fB	210	72.34	b.1.2.1,b.1.2.1	22033,22034
3cnwA	148	73.12		
1oh4A	179	73.29	b.18.1.18	92978
1wexA	104	74.47	d.58.7.1	114568
1bquA	215	75.46	b.1.2.1,b.1.2.1	22066,22067
1xynA	178	75.69	b.29.1.11	24322
3dfrA	162	76.73	c.71.1.1	34880
1ten	90	77.47		
1mfwA	107	78.37	d.15.11.1	84940
1f1gA	154	81.24	b.1.8.1	76153
2fk8A	318	82.35	c.66.1.18	133648
2ic2A	115	82.63	b.1.2.1	137233
1weyA	104	83.66	d.58.7.1	114569
1ew4A	106	84.18	d.82.2.1	40023
1hbnB	442	84.89	a.89.1.1,d.58.31.2	60900,60901