# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a0tP	413	17.70	f.4.3.2	43794
1bhpA	45	23.84	g.13.1.1	44626
1bhp	45	25.85		
2z2nA	299	27.65		
2cx5A	158	28.71		
1fyhB	229	30.79	b.1.2.1,b.1.2.1	22055,22056
1cfbA	205	38.59	b.1.2.1,b.1.2.1	21991,21992
1fna	93	40.34		
1qdeA	224	40.47	c.37.1.19	32410
1d9cA	121	41.15	a.26.1.3	16901
2z0xA	158	45.77		
1ppjE	196	48.08	b.33.1.1,f.23.12.1	104260,104261
2ic2A	115	48.97	b.1.2.1	137233
2dtrA	226	62.57	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2ddzA	190	62.82		
2h41A	95	64.80		
1nmuB	104	65.56	d.79.3.1	80666
2grrB	170	67.58		
1lfcA	25	67.83	j.3.1.5	46074
1q8cA	151	68.00	a.79.1.2	96202
3c19A	186	69.76		
1pmjX	185	70.08	b.18.1.18	104194
1q7fA	286	70.82	b.68.9.1	96036
2o57A	297	71.70		
1t6nA	220	72.27	c.37.1.19	106576
1icfI	65	77.76	g.28.1.1	44958
1ia9A	280	79.52	d.144.1.5	62113
1vecA	206	81.89	c.37.1.19	100575
3borA	237	81.92		
1hbnB	442	84.88	a.89.1.1,d.58.31.2	60900,60901
1gh9A	71	86.03	g.41.6.1	45266
1wisA	124	87.51	b.1.2.1	120975
1f6fB	210	88.94	b.1.2.1,b.1.2.1	22033,22034
2fcrA	173	89.79	c.23.5.1	31151