# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1my7A 114 4.111 b.1.18.1 79675 1x4rA 99 4.117 2pp6A 102 6.609 1cqqA 180 8.000 b.47.1.4 26422 1fna 93 8.312 1ca1 370 9.055 2zbvA 263 11.16 1js8A 394 11.46 a.86.1.1,b.112.1.1 67219,67220 3be3A 91 11.88 2pjhB 193 14.31 1mjcA 69 15.39 b.40.4.5 25319 3cwiA 78 16.23 2bibA 547 16.30 b.109.1.1,d.157.1.8 128581,128582 1vlyA 338 16.51 b.44.2.1,d.250.1.1 108871,108872 2pbtA 134 16.58 2hqlA 110 16.65 1fnaA 91 16.81 b.1.2.1 21971 1ktbA 405 17.02 b.71.1.1,c.1.8.1 72960,72961 1gctA 245 17.02 b.47.1.2 26021 2e7dA 131 17.68 2e12A 101 18.15 1wm3A 72 18.23 d.15.1.1 114736 1a62A 130 18.34 a.140.3.1,b.40.4.5 64708,64709 2bh8A 101 18.69 2r7dA 469 18.99 2f9hA 129 19.67 b.161.1.1 133162 1weyA 104 21.01 d.58.7.1 114569 2ex4A 241 23.08 c.66.1.42 132516 2ol5A 202 23.83 3rp2A 224 25.31 b.47.1.2 26298 1g9oA 91 27.82 b.36.1.1 60400 1ten 90 27.83 1tenA 90 28.88 b.1.2.1 21990 1d3bB 91 31.48 b.38.1.1 24804 2z79A 185 32.81 2ocsA 88 33.80 2jn9A 105 34.24 1a62 130 34.93 1k4nA 192 34.95 d.32.1.5 72059 1ca1A 370 35.16 a.124.1.1,b.12.1.3 19340,23648 2v90A 96 35.97 1g6gA 127 36.30 b.26.1.2 23916 1z9lA 128 37.01 1flmA 122 39.08 b.45.1.1 25747 1qhoA 686 39.34 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1cfbA 205 39.58 b.1.2.1,b.1.2.1 21991,21992 1dunA 134 40.53 b.85.4.1 28371 2f6eA 127 41.14 2he4A 90 41.70 2oezA 247 42.98 2hazA 105 43.39 b.1.2.1 136303 2j8gA 339 43.42 2f5yA 91 44.72 b.36.1.1 133015 1h641 75 44.82 3caxA 369 44.91 1o7dD 282 46.29 1u36A 106 46.35 b.1.18.1 107635 1qg3A 195 47.40 b.1.2.1,b.1.2.1 21993,21994 1q5hA 147 49.20 b.85.4.1 95893 2ie2A 222 49.68 1o9wA 177 50.94 b.2.3.5 86713 1ssxA 198 52.09 b.47.1.1 98978 2hpwA 233 52.37 2uzpA 144 52.75 2qt6A 498 53.93 1kqrA 179 54.67 b.29.1.14 72886 1pmjX 185 56.18 b.18.1.18 104194 1mbmA 198 56.68 b.47.1.3 78916 2furA 209 56.71 b.45.1.1 134185 1xedA 117 57.26 b.1.1.1 115229 1i9gA 280 57.95 c.66.1.13 62090 2pr3A 234 59.47 2gcxA 75 60.68 2icrA 237 61.45 1gteA 1025 61.72 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2ojwA 384 62.05 1rowA 109 62.09 b.1.11.2 97676 1f7dA 136 62.11 b.85.4.1 28353 1n7eA 97 62.29 b.36.1.1 91691 2ghpA 292 62.34 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1a34A 159 62.54 b.121.7.1 23286 1zsoA 164 62.74 b.166.1.1 125610 2dcyA 185 62.83 b.29.1.11 131388 1mqkL 120 64.57 b.1.1.1 85054 1kzlA 208 64.80 b.43.4.3,b.43.4.3 77635,77636 2a38A 194 65.41 2uvkA 357 66.48 3vubA 101 66.55 b.34.6.1 24613 1wsrA 375 66.56 2gduA 504 67.02 b.71.1.1,c.1.8.1 135032,135033 3c5xC 130 67.55 1a1x 108 68.03 1pj5A 830 68.83 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1qhtA 775 70.14 c.55.3.5,e.8.1.1 33722,43011 1uwvA 433 70.49 b.40.4.12,c.66.1.40 100128,100129 2dddA 225 70.65 2fwkA 121 71.24 b.38.1.1 134245 1a1xA 108 72.38 b.63.1.1 27514 2bcmA 165 73.06 2pi2E 142 73.49 1t8oA 245 73.85 b.47.1.2 119187 2fvgA 340 73.96 b.49.3.1,c.56.5.4 134201,134202 3by7A 100 74.69 2nqwA 93 74.75 2retA 103 75.47 2eefA 156 75.72 1mgqA 83 76.57 b.38.1.1 79099 3c8cA 240 76.95 2jwyA 168 77.29 3choA 610 77.79 1q6hA 224 78.67 d.26.1.1 95975 2o6fA 189 79.50 1n9pA 207 79.95 b.1.18.16 80343 1y0gA 191 81.54 b.61.6.1 116299 2ogrA 229 81.83 2h5uA 499 82.15 2r9pA 224 83.08 2bk8A 97 84.90 2al3A 90 86.26 d.15.1.2 126957 2pa1A 87 86.40 1amuA 563 86.64 e.23.1.1 43351 1aozA 552 86.65 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1yvcA 70 87.21 b.40.4.12 124094 2cq2A 114 87.26 d.58.7.1 130713 2bdgA 223 87.28 1f6fB 210 87.94 b.1.2.1,b.1.2.1 22033,22034 2hqkA 219 88.65 1lqyA 184 88.90 d.167.1.1 74212 1q6uA 245 89.24 d.26.1.1 95998 1um5H 217 89.47 b.1.1.1,b.1.1.2 113302,113303 1npsA 88 89.67 b.11.1.1 23622 2qyaA 124 89.86 2pt7A 330 89.98