# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ijqA	316	5.301	b.68.5.1,g.3.11.1	62506,62507
1xsoA	150	11.63	b.1.8.1	22273
1pmhX	185	12.10	b.18.1.18	104193
1pmjX	185	12.12	b.18.1.18	104194
1f6fB	210	14.29	b.1.2.1,b.1.2.1	22033,22034
1npeA	267	16.23	b.68.5.1	92032
2qq9A	226	17.29		
2g8sA	353	19.56		
3hhrB	203	26.21	b.1.2.1,b.1.2.1	22005,22006
1bymA	97	29.83	b.34.1.2	24458
1xnkA	196	30.10	b.29.1.11	122195
2ciaA	102	32.62		
1ynaA	194	32.77	b.29.1.11	24335
1q2bA	434	34.18	b.29.1.10	95624
1oh4A	179	35.02	b.18.1.18	92978
1musA	477	36.88	c.55.3.4	79494
2qpwA	149	38.85		
1khoA	370	41.03	a.124.1.1,b.12.1.3	72489,72490
1qfhA	212	43.25	b.1.18.10,b.1.18.10	21893,21894
2d4qA	257	43.69		
2hu5A	582	44.33	b.69.7.2,c.69.1.33	136763,136764
1kopA	223	45.77	b.74.1.1	27966
1egnA	434	45.98	b.29.1.10	59411
1ca1	370	46.14		
1rcf	169	46.39		
1xiwB	79	48.17	b.1.1.4	115368
1chkA	238	48.58	d.2.1.7	36999
1zxq	192	48.94		
1lfcA	25	51.23	j.3.1.5	46074
1ktbA	405	51.54	b.71.1.1,c.1.8.1	72960,72961
2uxtA	451	52.10		
1mxgA	435	52.19	b.71.1.1,c.1.8.1	85193,85194
1dt9A	437	52.28	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
1cfb	205	52.90		
2vknA	70	53.88		
2i2cA	272	54.24		
2qi2A	347	55.56		
2azaA	129	58.35	b.6.1.1	22901
1bhpA	45	59.29	g.13.1.1	44626
1d9cA	121	60.18	a.26.1.3	16901
1mjc	69	61.18		
1r17A	343	61.53	b.2.3.4,b.2.3.4	96796,96797
2shpA	525	62.87	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
2vgnA	386	65.63		
1cd9B	215	66.34	b.1.2.1,b.1.2.1	22041,22042
1gm6A	175	66.85	b.60.1.1	70272
1v04A	355	67.66	b.68.6.2	100240
1xb3A	128	69.77	b.6.1.1	115060
2z2nA	299	69.89		
2bhuA	602	71.16	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
2avxA	171	71.44		
1jaeA	471	72.13	b.71.1.1,c.1.8.1	27773,28760
1v10A	521	72.41	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1cuoA	129	72.54	b.6.1.1	23015
1xynA	178	75.30	b.29.1.11	24322
2yyoA	171	75.40		
1jzgA	128	77.65	b.6.1.1	67855
2nlvA	112	81.34	d.326.1.1	138362
2j9iA	421	82.44		
1rz1A	161	83.06	b.45.1.2	98124
1pvxA	194	84.02	b.29.1.11	24341
1n26A	325	87.32	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
2g23A	612	87.84