# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ijqA	316	2.299	b.68.5.1,g.3.11.1	62506,62507
1npeA	267	7.670	b.68.5.1	92032
2qq9A	226	14.10		
1oh4A	179	15.98	b.18.1.18	92978
2z2nA	299	16.32		
1rcf	169	18.13		
1xsoA	150	22.99	b.1.8.1	22273
1f6fB	210	23.82	b.1.2.1,b.1.2.1	22033,22034
1xiwB	79	25.64	b.1.1.4	115368
2qpwA	149	28.52		
1bhpA	45	31.43	g.13.1.1	44626
1dt9A	437	35.69	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
1pmjX	185	35.72	b.18.1.18	104194
1pmhX	185	36.13	b.18.1.18	104193
2qi2A	347	37.78		
1kopA	223	40.42	b.74.1.1	27966
1yobA	179	41.23	c.23.5.1	123776
2g8sA	353	43.58		
2ciaA	102	44.55		
3hhrB	203	47.41	b.1.2.1,b.1.2.1	22005,22006
1musA	477	47.88	c.55.3.4	79494
1mxgA	435	47.95	b.71.1.1,c.1.8.1	85193,85194
1bymA	97	49.33	b.34.1.2	24458
1khoA	370	50.77	a.124.1.1,b.12.1.3	72489,72490
1mjc	69	51.29		
1v04A	355	53.14	b.68.6.2	100240
1ca1	370	54.06		
2d4qA	257	54.55		
1v10A	521	55.42	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1lfcA	25	57.14	j.3.1.5	46074
1zxq	192	60.05		
2bvaA	292	63.18		
1cd9B	215	63.28	b.1.2.1,b.1.2.1	22041,22042
1cfb	205	64.50		
2vgnA	386	65.52		
1d9cA	121	65.55	a.26.1.3	16901
2cx5A	158	66.94		
2nytA	190	68.30		
1qfhA	212	69.34	b.1.18.10,b.1.18.10	21893,21894
1cqkA	101	69.76	b.1.1.2	21547
1xnkA	196	71.20	b.29.1.11	122195
1ynaA	194	73.43	b.29.1.11	24335
1chkA	238	73.74	d.2.1.7	36999
2c81A	418	73.74		
1bhp	45	75.89		
1e1aA	314	77.59	b.68.6.1	59155
1dmgA	225	78.05	c.22.1.1	31036
1bhuA	102	80.39	b.11.1.3	23631
1y8qA	346	83.33		
1hbnB	442	85.25	a.89.1.1,d.58.31.2	60900,60901
2ic2A	115	86.52	b.1.2.1	137233
2avxA	171	86.69		
1q7fA	286	87.42	b.68.9.1	96036
1mroB	442	87.55	a.89.1.1,d.58.31.2	18531,39449