# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ijqA	316	5.512	b.68.5.1,g.3.11.1	62506,62507
2qq9A	226	12.35		
1npeA	267	13.53	b.68.5.1	92032
1f6fB	210	16.28	b.1.2.1,b.1.2.1	22033,22034
1rcf	169	17.67		
1xsoA	150	18.57	b.1.8.1	22273
1bhpA	45	22.64	g.13.1.1	44626
1dt9A	437	23.35	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
1pmjX	185	30.67	b.18.1.18	104194
1pmhX	185	30.72	b.18.1.18	104193
2qpwA	149	32.12		
2qi2A	347	32.36		
2z2nA	299	36.47		
1oh4A	179	37.28	b.18.1.18	92978
1v10A	521	39.14	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
3hhrB	203	39.96	b.1.2.1,b.1.2.1	22005,22006
1musA	477	42.50	c.55.3.4	79494
1cd9B	215	42.74	b.1.2.1,b.1.2.1	22041,22042
1xiwB	79	43.18	b.1.1.4	115368
1kopA	223	47.87	b.74.1.1	27966
1lfcA	25	50.17	j.3.1.5	46074
1yobA	179	50.23	c.23.5.1	123776
1bymA	97	50.63	b.34.1.2	24458
1xnkA	196	52.50	b.29.1.11	122195
2vgnA	386	52.80		
2g8sA	353	52.99		
1khoA	370	54.28	a.124.1.1,b.12.1.3	72489,72490
1bhp	45	54.65		
1ca1	370	55.51		
2bvaA	292	55.99		
1agtA	38	57.23	g.3.7.2	44156
2nytA	190	57.41		
1v04A	355	58.30	b.68.6.2	100240
2ciaA	102	59.48		
2qiwA	255	61.50		
1howA	373	63.60	d.144.1.7	41679
1q8yA	373	65.76	d.144.1.7	96234
1hbnB	442	66.76	a.89.1.1,d.58.31.2	60900,60901
2avxA	171	66.78		
1d9cA	121	67.44	a.26.1.3	16901
2i2cA	272	67.98		
1xb3A	128	68.50	b.6.1.1	115060
2azaA	129	68.96	b.6.1.1	22901
1ynaA	194	69.81	b.29.1.11	24335
2j9iA	421	71.96		
1dmgA	225	72.27	c.22.1.1	31036
1cfb	205	72.28		
1jaeA	471	73.59	b.71.1.1,c.1.8.1	27773,28760
1y8qA	346	74.72		
1bhuA	102	75.26	b.11.1.3	23631
2ic2A	115	75.57	b.1.2.1	137233
2c81A	418	78.19		
1mroB	442	78.49	a.89.1.1,d.58.31.2	18531,39449
1q2bA	434	80.88	b.29.1.10	95624
1egnA	434	82.59	b.29.1.10	59411
2shpA	525	84.25	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1aol	228	85.36		
2d4eA	515	87.90		
2uxtA	451	88.23		
1cuoA	129	89.15	b.6.1.1	23015
1jzgA	128	89.64	b.6.1.1	67855