# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hbnB	442	29.91	a.89.1.1,d.58.31.2	60900,60901
1rcf	169	30.80		
2qpwA	149	34.38		
1mroB	442	38.03	a.89.1.1,d.58.31.2	18531,39449
1e6yB	433	39.91	a.89.1.1,d.58.31.2	18535,39453
3hhrB	203	42.50	b.1.2.1,b.1.2.1	22005,22006
1ijqA	316	46.54	b.68.5.1,g.3.11.1	62506,62507
1q0uA	219	47.57	c.37.1.19	95512
2qi2A	347	49.21		
2qq9A	226	52.50		
1n26A	325	53.91	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1bymA	97	58.80	b.34.1.2	24458
2bhuA	602	59.79	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
1cd9B	215	60.71	b.1.2.1,b.1.2.1	22041,22042
1t6nA	220	64.92	c.37.1.19	106576
1qw1A	121	68.46		
1npyA	271	74.92	c.2.1.7,c.58.1.5	85995,85996
2jo7A	224	78.66		
2azaA	129	78.74	b.6.1.1	22901
1xn5A	146	81.11	d.129.3.5	115574
2avxA	171	81.27		
1yezA	68	81.35	b.40.4.12	123026
1agtA	38	82.25	g.3.7.2	44156
1nktA	922	83.03	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	85830,85831,85832,85833
1yobA	179	83.55	c.23.5.1	123776
1bhpA	45	84.10	g.13.1.1	44626
1xb3A	128	85.47	b.6.1.1	115060
1cfb	205	86.50		
1f6fB	210	88.16	b.1.2.1,b.1.2.1	22033,22034
1xsoA	150	88.36	b.1.8.1	22273