# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1zu0A 529 0.8345 2pndA 119 1.793 2q8xA 331 2.627 1v10A 521 3.995 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1olzA 663 3.998 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1j1tA 233 4.573 b.29.1.18 90771 2fp8A 322 5.387 3b50A 310 5.609 1mi4A 427 7.206 d.68.2.2 79141 2z8lA 208 7.475 1yw5A 177 10.45 1yobA 179 10.96 c.23.5.1 123776 1ms9A 648 12.55 b.29.1.15,b.68.1.1 85088,85089 1cfb 205 14.23 1erxA 184 14.69 b.60.1.1 27164 1q2bA 434 15.30 b.29.1.10 95624 2ojhA 297 17.24 2uvkA 357 18.15 1egnA 434 18.28 b.29.1.10 59411 1wp5A 323 18.71 b.68.10.1 114780 1rcf 169 21.15 1nbaA 264 22.51 c.33.1.3 31753 1hn0A 1021 22.82 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1fdrA 248 23.37 b.43.4.2,c.25.1.1 25653,31543 1loxA 662 23.91 a.119.1.2,b.12.1.1 19238,23638 2obwA 258 24.00 2h5gA 463 27.17 1o6gA 710 27.68 b.69.7.1,c.69.1.4 81087,81088 2ieaA 886 27.72 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2uwxA 494 29.62 e.3.1.1 140002 2azaA 129 29.72 b.6.1.1 22901 1oh4A 179 30.17 b.18.1.18 92978 2bcgG 453 30.39 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 1je0A 236 30.68 c.56.2.1 66581 1chkA 238 30.71 d.2.1.7 36999 1bvyF 191 31.13 c.23.5.1 31207 2javA 279 31.34 d.144.1.7 138243 1kopA 223 32.23 b.74.1.1 27966 3b5lB 198 32.31 2fauA 341 33.74 1kv7A 488 34.47 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1z9nA 177 34.63 2eyuA 261 35.24 1vkmA 297 36.23 c.138.1.1 108670 1qfhA 212 36.86 b.1.18.10,b.1.18.10 21893,21894 1ppjE 196 40.36 b.33.1.1,f.23.12.1 104260,104261 2pviA 157 41.31 c.52.1.6 33302 3b7fA 394 42.01 1xynA 178 42.37 b.29.1.11 24322 1jmcA 246 43.23 b.40.4.3,b.40.4.3 25300,25301 2bvaA 292 43.50 2yv8A 164 44.45 2i7xA 717 44.90 2ifrA 206 45.25 b.29.1.20 137346 1o1zA 234 45.74 c.1.18.3 86555 2rdeA 251 46.69 1z9tA 255 46.70 2bjkA 516 47.27 1s4vA 229 48.12 d.3.1.1 98511 1fs0E 138 49.37 a.2.10.1,b.93.1.1 59997,59998 1zvkA 358 49.96 1hfuA 503 50.00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1n26A 325 50.68 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1ua7A 422 52.56 b.71.1.1,c.1.8.1 107759,107760 2q8oA 136 53.88 1d0yA 761 54.41 b.34.3.1,c.37.1.9 24581,32178 2gnqA 336 55.00 1tvoA 368 55.53 1m15A 357 55.64 a.83.1.1,d.128.1.2 78368,78369 1gnlA 544 55.79 e.26.1.1 70287 2d4xA 248 57.13 1um5H 217 57.22 b.1.1.1,b.1.1.2 113302,113303 1bquA 215 57.69 b.1.2.1,b.1.2.1 22066,22067 2gmwA 211 57.72 2jigA 224 58.07 1z6jT 211 58.90 b.1.2.1,b.1.2.1 124527,124528 1my6A 199 59.75 a.2.11.1,d.44.1.1 85232,85233 1gr0A 367 59.82 c.2.1.3,d.81.1.3 70379,70380 2ghsA 326 60.10 b.68.6.1 135209 1or0B 528 60.20 1eerB 227 60.34 b.1.2.1,b.1.2.1 22011,22012 2hrgA 496 60.36 1xiwB 79 60.87 b.1.1.4 115368 2aq2B 237 61.78 b.40.2.2,d.15.6.1 127146,127147 2v6oA 596 62.43 1ynaA 194 63.27 b.29.1.11 24335 3btxA 204 64.41 1dcqA 278 65.10 d.211.1.1,g.45.1.1 19178,45326 1rwiA 270 65.29 b.68.9.1 97987 1npeA 267 65.45 b.68.5.1 92032 1dbhA 354 66.42 a.87.1.1,b.55.1.1 18514,26967 2h14A 317 66.69 1z9pA 155 66.90 1f0iA 504 67.43 d.136.1.2,d.136.1.2 59566,59567 1bymA 97 69.09 b.34.1.2 24458 3hhrB 203 69.87 b.1.2.1,b.1.2.1 22005,22006 1cd9B 215 70.22 b.1.2.1,b.1.2.1 22041,22042 1vm9A 111 71.93 b.33.1.1 108886 1sg1X 161 72.31 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 2jrfA 184 72.90 1tt0A 623 73.17 2f6kA 307 73.30 c.1.9.15 133047 2rdgA 196 73.31 1gycA 499 74.89 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1nrwA 288 74.89 c.108.1.10 86128 1y2tA 142 75.13 b.97.1.2 116407 1ylnA 252 76.40 b.45.2.1,b.45.2.2 123657,123658 1euvA 221 76.48 d.3.1.7 37133 2i0kA 561 76.84 2ef0A 301 78.22 1wucA 250 78.99 2ic2A 115 79.14 b.1.2.1 137233 1xwwA 157 79.62 1zxq 192 80.86 3b55A 451 80.87 3ci3A 194 82.52 1dseA 292 84.82 a.93.1.1 59130 2z2nA 299 85.21 1wruA 379 85.47 2ervA 150 86.08 2hu5A 582 86.83 b.69.7.2,c.69.1.33 136763,136764 1mqoA 227 89.75 d.157.1.1 103846