# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1x4rA 99 1.520 2pbtA 134 2.826 1fna 93 3.459 1ktbA 405 3.527 b.71.1.1,c.1.8.1 72960,72961 1my7A 114 6.826 b.1.18.1 79675 2pjhB 193 6.969 2acaA 189 8.336 d.63.1.2 126545 2j8mA 172 8.708 2fjtA 182 9.95 1ryjA 70 11.51 d.15.3.2 98104 2al3A 90 12.73 d.15.1.2 126957 1cqqA 180 14.45 b.47.1.4 26422 2f9hA 129 14.90 b.161.1.1 133162 2e7dA 131 15.12 1g9oA 91 18.64 b.36.1.1 60400 2pwyA 258 19.84 1i9gA 280 21.19 c.66.1.13 62090 2f5yA 91 22.11 b.36.1.1 133015 1bftA 101 25.40 b.1.18.1 21934 2pp6A 102 26.18 2c78A 405 27.17 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2ascA 65 27.55 g.3.7.1 127247 2furA 209 29.08 b.45.1.1 134185 2zbvA 263 29.36 2gcxA 75 30.04 2nqwA 93 30.42 2q3gA 89 30.83 1a62A 130 31.03 a.140.3.1,b.40.4.5 64708,64709 2f6eA 127 31.06 1uasA 362 31.28 b.71.1.1,c.1.8.1 88388,88389 2retA 103 32.61 1euvB 86 32.64 d.15.1.1 37598 1tiqA 180 32.86 d.108.1.1 107010 2eisA 133 33.47 2pa1A 87 33.76 2he4A 90 35.12 1zvgA 66 35.21 1tllA 688 35.57 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1xedA 117 35.68 b.1.1.1 115229 1vhsA 175 35.68 d.108.1.1 100698 2j8gA 339 37.06 3cwiA 78 38.46 1aozA 552 38.57 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1f6fB 210 38.62 b.1.2.1,b.1.2.1 22033,22034 1yvcA 70 39.08 b.40.4.12 124094 1mjcA 69 39.44 b.40.4.5 25319 2azwA 148 40.46 d.113.1.1 127615 3caxA 369 40.79 1v5tA 90 43.01 d.15.1.1 108385 1vcdA 126 44.94 d.113.1.1 119970 2bibA 547 45.91 b.109.1.1,d.157.1.8 128581,128582 1wm3A 72 46.45 d.15.1.1 114736 1xn5A 146 46.94 d.129.3.5 115574 2o6fA 189 47.31 1segA 64 48.07 g.3.7.1 105453 2uzcA 88 48.59 1tenA 90 48.94 b.1.2.1 21990 1kv9A 668 50.22 a.3.1.6,b.70.1.1 73056,73057 1wv3A 238 51.94 b.26.1.4,b.26.1.4 121318,121319 1plcA 99 52.89 b.6.1.1 22846 1ten 90 53.53 3be3A 91 53.78 1a70A 97 54.33 d.15.4.1 37678 2b25A 336 54.37 c.66.1.13 127699 1cfb 205 54.73 2ol5A 202 56.07 1ca1A 370 56.37 a.124.1.1,b.12.1.3 19340,23648 2oitA 434 56.82 2h3jA 75 57.26 1f7dA 136 57.86 b.85.4.1 28353 2fxqA 264 59.03 1h9mA 145 59.36 b.40.6.2,b.40.6.2 60833,60834 1mjc 69 59.64 1djtA 64 60.25 g.3.7.1 44132 1lqyA 184 61.02 d.167.1.1 74212 1cz4A 185 62.23 b.52.2.3,d.31.1.1 26934,38468 1h8gA 95 62.77 b.109.1.1 65735 1t3qA 168 63.12 a.56.1.1,d.15.4.2 106367,106368 2a9dA 372 63.61 b.1.18.6,d.176.1.1 126431,126432 1n1tA 641 64.95 b.29.1.15,b.68.1.1 79821,79822 1flmA 122 65.55 b.45.1.1 25747 1fnaA 91 65.95 b.1.2.1 21971 1a62 130 66.87 1o54A 277 68.02 c.66.1.13 92482 1q5hA 147 68.02 b.85.4.1 95893 1g6gA 127 68.59 b.26.1.2 23916 2h5cA 198 69.89 b.47.1.1 136145 2pt7A 330 69.92 1ybyA 215 71.67 1offA 97 71.82 d.15.4.1 86947 2ckkA 127 71.83 1n62A 166 71.86 a.56.1.1,d.15.4.2 80090,80091 1iueA 98 72.29 d.15.4.1 90697 1xnb 185 72.77 2bk8A 97 73.11 2jn9A 105 74.32 1y8qB 640 75.28 2ogrA 229 75.32 2qt6A 498 75.41 1u2xA 474 76.27 c.72.1.3 107622 2dddA 225 77.68 2yxyA 115 77.75 2cntA 160 78.13 2qf7A 1165 78.13 1qqcA 773 78.15 c.55.3.5,e.8.1.1 33724,43013 1wit 93 79.53 2a38A 194 80.34 1rowA 109 81.67 b.1.11.2 97676 1gw5S 142 83.11 d.110.4.2 70633 1bymA 97 83.31 b.34.1.2 24458 1widA 130 83.47 b.142.1.2 114667 2h5uA 499 85.67 2q6kA 283 86.54 1weyA 104 86.86 d.58.7.1 114569 1u36A 106 87.00 b.1.18.1 107635