This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 75 NATAA G A 2 76 NATAA G A 3 77 NATAA E A 4 78 NATAA L A 5 79 NATRO P A 6 80 NATAA L A 7 81 NATAA I A 8 82 NATAA L A 9 83 NATAA A A 10 84 NATAA D A 11 85 NATAA D A 12 86 NATAA G A 13 87 NATAA T A 14 88 NATAA Y A 15 89 NATAA E A 16 90 NATAA I A 17 91 NATAA T A 18 92 NATAA K A 19 93 NATAA L A 20 94 NATAA N A 21 95 NATAA G A 22 96 NATAA G A 23 97 NATAA R A 24 98 NATAA R A 25 99 NATAA F A 26 100 NATAA L A 27 101 NATAA F A 28 102 NATAA R A 29 103 NATAA M A 30 104 NATAA K A 31 105 NATAA N A 32 106 NATAA L A 33 107 NATAA G A 34 108 NATAA I A 35 109 NATAA E A 36 110 NATAA S A 37 111 NATAA G A 38 112 NATAA K A 39 113 NATAA K A 40 114 NATAA I A 41 115 NATAA Q A 42 116 NATAA V A 43 117 NATAA S A 44 118 NATAA G A 45 119 NATAA R A 46 120 NATAA R A 47 121 NATAA Y A 48 122 NATAA Y A 49 123 NATAA I A 50 124 NATAA E A 51 125 NATAA G A 52 126 NATAA R A 53 127 NATAA E A 54 128 NATAA I A 55 129 NATAA D A 56 130 NATAA L A 57 131 NATAA G A 58 132 NATAA Y A 59 133 NATAA G A 60 134 NATAA E A 61 135 NATAA A A 62 136 NATAA T A 63 137 NATAA K A 64 138 NATAA I A 65 139 NATAA W A 66 140 NATAA V A 67 141 NATAA R A 68 142 NATAA R A 69 143 NATAA V A 70 144 NATAA S A 71 145 NATAA D A 72 146 NATAA A A 73 147 NATAA G A 74 148 NATAA E A 75 149 NATAA E A 76 150 NATAA S A 77 151 NATAA H A 78 152 NATRO P A 79 153 NATAA Q A 80 154 NATAA K