# List of top-scoring protein chains for T0460.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gldA 119 28.38 2gl2A 119 28.55 1x3zB 72 29.47 a.189.1.1 121674 2gkqA 119 30.43 2avrX 119 31.14 1zmbA 290 33.14 c.23.10.7 125355 2df7A 458 35.10 b.121.4.9 131449 2qsfX 171 36.06 2f0aA 98 43.92 b.36.1.1 132661 1wcdJ 441 46.59 b.121.4.9 120887 1wceA 441 46.74 2gsyA 456 48.80 b.121.4.9 135599 3c37A 253 58.84 1v7oA 165 60.84 d.67.1.2 100480