# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2obaA	138	20.82		
2jwiA	143	26.42		
1y13A	181	26.64	d.96.1.2	116319
1f5jA	199	27.75	b.29.1.11	24342
1z2nX	324	35.33		
2a84A	300	35.79	c.26.1.4	126389
2hcrA	326	38.29		
1dutA	133	40.82	b.85.4.1	28355
2jzfA	143	44.77		
1x3zB	72	45.69	a.189.1.1	121674
1h4gA	207	50.60	b.29.1.11	70863
1f7dA	136	52.42	b.85.4.1	28353
2jzdA	129	52.49		
1n2eA	300	52.77	c.26.1.4	85268
2odtX	328	53.95		
2dt9A	167	58.16		
1fqvD	149	62.50	a.157.1.1,d.42.1.1	19263,38667
2ictA	94	63.02		
1id3B	102	63.05	a.22.1.1	66113
2g64A	140	63.45	d.96.1.2	134694
1aoiB	87	63.57	a.22.1.1	16470
1pvxA	194	64.34	b.29.1.11	24341
1fs1B	141	67.94	a.157.1.1,d.42.1.1	19252,38664
2vkjA	106	68.87		
1zckA	154	71.05		
1u7pA	164	74.18	c.108.1.17	113095
2gufA	594	75.10	f.4.3.3	135736
1t01A	255	75.14	a.24.9.1,a.24.9.1	106188,106189
1h1aA	191	77.04	b.29.1.11	83450
2b7kA	200	84.64	c.47.1.10	128042