# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1amy 403 7.458 1ht6A 405 10.08 b.71.1.1,c.1.8.1 83629,83630 2guyA 478 14.44 b.71.1.1,c.1.8.1 135754,135755 1j0hA 588 16.54 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1zckA 154 18.54 1jkxA 212 19.96 c.65.1.1 66813 1u7pA 164 21.59 c.108.1.17 113095 1avaA 403 21.86 b.71.1.1,c.1.8.1 27797,28784 2gar 212 25.86 1e43A 483 29.12 b.71.1.1,c.1.8.1 59217,59218 1v5xA 203 31.11 c.1.2.4 100377 1nsj 205 32.44 1pii 452 32.57 2obaA 138 34.81 1mejA 223 35.50 c.65.1.1 79029 1ea9C 583 36.54 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1meoA 209 38.44 c.65.1.1 79035 2ywrA 216 39.16 1x3zB 72 39.23 a.189.1.1 121674 7taa 478 40.81 1h75A 81 40.96 c.47.1.1 60716 1h8eA 510 41.47 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1uouA 474 44.03 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1fqvD 149 44.12 a.157.1.1,d.42.1.1 19263,38667 2a84A 300 44.63 c.26.1.4 126389 1jmvA 141 44.96 c.26.2.4 66897 2ictA 94 53.85 2oblA 347 55.95 2vkjA 106 58.62 1v9dA 340 60.18 a.207.1.1 100535 2dpyA 438 62.88 2ggtA 164 66.04 c.47.1.10 135156 1bplB 294 66.16 b.71.1.1 27716 1d3cA 686 71.05 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1vjrA 271 73.86 c.108.1.14 100832 2jdiA 510 75.00 1rvgA 305 75.18 c.1.10.2 97920 1f9mA 112 76.00 c.47.1.1 32736 1fs1B 141 76.07 a.157.1.1,d.42.1.1 19252,38664 2ht9A 146 77.82 1y13A 181 78.77 d.96.1.2 116319 1skyB 502 79.46 a.69.1.1,b.49.1.1,c.37.1.11 18313,26478,32358 2b7kA 200 80.33 c.47.1.10 128042 1f5jA 199 81.24 b.29.1.11 24342 2nqrA 411 81.53 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2f9sA 151 82.14 c.47.1.10 133168 1f7dA 136 83.05 b.85.4.1 28353 3cecA 104 83.83 2bw0A 329 85.91 b.46.1.1,c.65.1.1 129303,129304 1dutA 133 86.17 b.85.4.1 28355 2flsA 132 86.20 2aaaA 484 88.56 b.71.1.1,c.1.8.1 27777,28764