# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x3zB	72	26.06	a.189.1.1	121674
1zckA	154	26.82		
2obaA	138	34.83		
1u7pA	164	40.73	c.108.1.17	113095
1y13A	181	43.33	d.96.1.2	116319
2nqtA	352	43.55		
3cecA	104	46.62		
1fs1B	141	53.46	a.157.1.1,d.42.1.1	19252,38664
1amy	403	57.50		
2jwiA	143	62.43		
1fqvD	149	65.27	a.157.1.1,d.42.1.1	19263,38667
1id3B	102	66.27	a.22.1.1	66113
2ictA	94	67.02		
2gar	212	67.41		
1h75A	81	67.46	c.47.1.1	60716
1ea9C	583	72.52	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
2g30A	258	73.12	b.1.10.1,d.105.1.1	134546,134547
1ht6A	405	73.85	b.71.1.1,c.1.8.1	83629,83630
1aoiB	87	74.40	a.22.1.1	16470
2guyA	478	75.57	b.71.1.1,c.1.8.1	135754,135755
2flsA	132	76.36		
1v9dA	340	78.44	a.207.1.1	100535
2dj6A	115	80.01		
1w6vA	141	80.56	d.324.1.1	120674
2o6kA	81	81.10		
2b7kA	200	84.81	c.47.1.10	128042
1t01A	255	85.09	a.24.9.1,a.24.9.1	106188,106189
1e43A	483	88.46	b.71.1.1,c.1.8.1	59217,59218
1jfuA	186	89.53	c.47.1.10	62940