# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jzfA	143	12.16		
1x3zB	72	15.05	a.189.1.1	121674
2jwiA	143	18.41		
1v9dA	340	18.81	a.207.1.1	100535
2jzdA	129	26.26		
2obaA	138	27.43		
1id3B	102	28.66	a.22.1.1	66113
1fs1B	141	31.19	a.157.1.1,d.42.1.1	19252,38664
1j0hA	588	33.80	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2dsmA	72	34.01		
2ictA	94	37.21		
1aoiB	87	38.23	a.22.1.1	16470
2pa7A	141	42.37		
1qba	858	43.24		
2dj6A	115	45.78		
2b7kA	200	55.17	c.47.1.10	128042
3cecA	104	56.40		
1zckA	154	58.73		
2g30A	258	59.75	b.1.10.1,d.105.1.1	134546,134547
1y13A	181	65.55	d.96.1.2	116319
1amy	403	67.70		
2ht9A	146	72.51		
1e43A	483	73.58	b.71.1.1,c.1.8.1	59217,59218
2nqrA	411	79.47	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1umqA	81	80.08	a.4.1.12	99625
2guyA	478	84.10	b.71.1.1,c.1.8.1	135754,135755
2qguA	211	84.98		
2flsA	132	86.68		
1vlgA	176	87.06	a.25.1.1	108816
1ht6A	405	89.75	b.71.1.1,c.1.8.1	83629,83630