# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oc3A 303 3.154 1pbtA 244 4.424 c.124.1.1 94416 1rz2A 254 5.442 b.100.1.1 105130 2a84A 300 7.452 c.26.1.4 126389 2odtX 328 7.689 2yv8A 164 7.889 2qguA 211 8.558 1suwA 249 9.593 e.52.1.1 106027 2veoA 441 10.00 1x3zB 72 10.33 a.189.1.1 121674 2ef5A 290 10.50 1fk9A 543 11.16 c.55.3.1,e.8.1.2 33607,43080 1ulkA 126 11.98 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 2obaA 138 12.16 2bmbA 545 13.27 1nfkA 325 15.18 b.1.18.1,b.2.5.3 21929,22444 2nt8A 223 15.31 1um8A 376 15.68 c.37.1.20 99580 1f5jA 199 15.76 b.29.1.11 24342 2gm6A 208 16.89 1nsj 205 17.66 1j3gA 187 18.67 d.118.1.1 77075 1fqvD 149 18.76 a.157.1.1,d.42.1.1 19263,38667 1je0A 236 21.20 c.56.2.1 66581 1w6vA 141 21.29 d.324.1.1 120674 1vfsA 386 21.42 b.49.2.2,c.1.6.1 108584,108585 2cevA 299 21.44 c.42.1.1 32576 1w32A 348 22.08 c.1.8.3 114120 1w96A 554 23.00 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1sw2A 275 23.41 c.94.1.1 106064 2jwiA 143 24.17 1zckA 154 24.58 2qs9A 194 24.83 1h4gA 207 25.88 b.29.1.11 70863 1tca 317 25.96 2g30A 258 26.09 b.1.10.1,d.105.1.1 134546,134547 1v5xA 203 26.30 c.1.2.4 100377 1ll7A 392 27.08 c.1.8.5,d.26.3.1 78085,78086 1vjfA 180 27.38 d.116.1.1 100809 1jdwA 423 29.90 d.126.1.2 41129 1peqA 714 30.55 a.98.1.1,c.7.1.2 104131,104132 1id3B 102 31.08 a.22.1.1 66113 1f75A 249 31.11 c.101.1.1 59662 2q4oA 215 36.36 c.129.1.1 139872 2oogA 287 37.50 2gf6A 135 37.56 d.38.1.1 135077 1wy2A 351 37.76 2hf0A 316 38.07 3ci3A 194 38.24 1lvl 458 39.82 1wu2A 396 40.67 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1pvxA 194 41.10 b.29.1.11 24341 1t01A 255 41.25 a.24.9.1,a.24.9.1 106188,106189 1xnb 185 41.41 1aoiB 87 44.89 a.22.1.1 16470 1l2uA 245 44.97 c.1.2.3 73516 1amp 291 45.37 2dj6A 115 45.65 1a66A 178 45.76 b.2.5.3 22441 1pg4A 652 46.70 e.23.1.1 88067 2ictA 94 47.61 1axj 122 48.66 1h1aA 191 49.96 b.29.1.11 83450 1dunA 134 51.18 b.85.4.1 28371 1ve5A 311 51.66 c.79.1.1 120013 1yge 839 52.85 3biqA 467 53.01 1dcjA 81 53.77 d.68.3.3 59115 1l0qA 391 53.89 b.1.3.1,b.69.2.3 77644,77645 2bfgA 503 54.36 b.71.1.2,c.1.8.3 128423,128424 2jg9C 131 55.58 1q5hA 147 56.21 b.85.4.1 95893 1fs1B 141 57.70 a.157.1.1,d.42.1.1 19252,38664 1h8mA 140 58.46 d.110.4.1 60782 2r85A 334 58.85 2ae0X 345 59.01 1tiqA 180 60.07 d.108.1.1 107010 3c9uA 342 60.46 1topA 162 61.26 a.39.1.5 17223 1zq1C 633 62.50 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 1n35A 1267 62.64 e.8.1.4 79935 1tcaA 317 62.66 c.69.1.17 34726 3pvaA 335 62.71 d.153.1.3 41854 2f9sA 151 62.74 c.47.1.10 133168 1pixA 587 65.91 c.14.1.4,c.14.1.4 118578,118579 1f8eA 388 66.90 b.68.1.1 59694 1n2sA 299 67.02 c.2.1.2 79857 2vkjA 106 67.31 2gkgA 127 67.39 2egjA 128 67.63 2evvA 207 70.24 2ganA 190 71.18 d.108.1.1 134889 1tfrA 305 71.59 a.60.7.1,c.120.1.2 18081,33351 1zd9A 188 73.87 c.37.1.8 124938 1fgqA 839 74.02 a.119.1.1,b.12.1.1 59826,59827 1tqjA 230 75.27 c.1.2.2 107228 2i1yA 301 75.33 1u7pA 164 76.76 c.108.1.17 113095 1dcqA 278 77.86 d.211.1.1,g.45.1.1 19178,45326 3cecA 104 77.96 1klqA 197 78.91 d.135.1.1 68689 1yvkA 163 79.59 d.108.1.1 124101 1rovA 857 79.66 a.119.1.1,b.12.1.1 97674,97675 1u0tA 307 80.12 e.52.1.1 107567 2jzdA 129 80.33 1reqB 637 83.37 c.1.19.1,c.23.6.1 29621,31248 2j0nA 200 83.72 a.250.1.1 137899 1m7vA 363 84.08 d.174.1.1 78748 1xsjA 778 84.18 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2basA 431 84.59 c.1.33.1,d.110.6.2 128244,128245 2gicA 422 85.51 a.260.1.1 135227 1r89A 437 85.73 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1tfr 305 85.96 1ej6A 1289 86.04 i.7.1.1 45967 2bazA 142 86.44 2pzhA 135 86.46 1hfeL 421 87.23 c.96.1.1,d.58.1.5 36018,39001 2dt8A 280 87.38 2qswA 100 89.42