# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zckA	154	16.78		
1x3zB	72	25.21	a.189.1.1	121674
2obaA	138	26.68		
1u7pA	164	38.64	c.108.1.17	113095
1y13A	181	40.06	d.96.1.2	116319
2gar	212	40.78		
1amy	403	42.22		
1jkxA	212	43.59	c.65.1.1	66813
1fs1B	141	49.44	a.157.1.1,d.42.1.1	19252,38664
1v9dA	340	49.68	a.207.1.1	100535
2jzfA	143	54.75		
2jwiA	143	55.24		
2hcrA	326	57.03		
1j0hA	588	57.14	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
1id3B	102	57.40	a.22.1.1	66113
1aoiB	87	60.23	a.22.1.1	16470
2guyA	478	61.41	b.71.1.1,c.1.8.1	135754,135755
2nqtA	352	62.19		
2jzdA	129	62.57		
1ht6A	405	64.68	b.71.1.1,c.1.8.1	83629,83630
2g30A	258	67.05	b.1.10.1,d.105.1.1	134546,134547
2b7kA	200	69.08	c.47.1.10	128042
2ictA	94	70.35		
2dt9A	167	71.26		
1t01A	255	72.77	a.24.9.1,a.24.9.1	106188,106189
1dutA	133	77.51	b.85.4.1	28355
2a84A	300	81.33	c.26.1.4	126389
1n2eA	300	81.93	c.26.1.4	85268
1w6vA	141	87.79	d.324.1.1	120674
1v74A	107	88.25	d.243.1.1	100442
2dj6A	115	89.54