# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dsmA	72	4.498		
1fs1B	141	8.328	a.157.1.1,d.42.1.1	19252,38664
1zckA	154	23.03		
1x3zB	72	25.21	a.189.1.1	121674
1ztsA	139	30.12		
2jwiA	143	31.82		
1v32A	101	32.91	a.42.1.1	100277
2jzfA	143	33.52		
1d7qA	143	39.47	b.40.4.5	25331
2axwA	134	40.51		
1a66A	178	41.57	b.2.5.3	22441
1v9dA	340	47.94	a.207.1.1	100535
2jzdA	129	50.10		
2hiqA	113	52.19	d.58.4.12	136529
2f2aB	483	52.69	a.182.1.2,d.128.1.5	132802,132803
1wd6A	123	55.67	d.58.4.12	114525
1b4qA	105	55.90	c.47.1.1	32773
2ht9A	146	56.63		
1is3A	135	57.68	b.29.1.3	76773
2hjqA	111	58.78		
1w33A	181	61.89		
2psoA	237	62.33		
2jn9A	105	64.87		
2r18A	139	65.61		
2g30A	258	67.47	b.1.10.1,d.105.1.1	134546,134547
1dp0A	1023	67.51	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
2flsA	132	68.27		
2obaA	138	69.40		
2j0nA	200	71.63	a.250.1.1	137899
2nqrA	411	76.18	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1dp4A	435	78.17	c.93.1.1	35710
1p9kA	79	79.83	d.66.1.6	94392
2pa7A	141	80.08		
1oksA	56	83.91	a.8.5.1	93271
1x52A	124	84.19		
1wu2A	396	88.20	b.85.6.1,b.103.1.1,c.57.1.2	114884,114885,114886