# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2obaA	138	10.04		
1fs1B	141	10.86	a.157.1.1,d.42.1.1	19252,38664
2dsmA	72	27.78		
1zckA	154	29.87		
2pa7A	141	32.99		
1x3zB	72	35.07	a.189.1.1	121674
1fqvD	149	37.10	a.157.1.1,d.42.1.1	19263,38667
1ea9C	583	40.03	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
2jzfA	143	43.31		
1y13A	181	46.63	d.96.1.2	116319
1id3B	102	48.07	a.22.1.1	66113
1t01A	255	48.36	a.24.9.1,a.24.9.1	106188,106189
2jwiA	143	49.70		
1f5jA	199	52.92	b.29.1.11	24342
1j3gA	187	54.56	d.118.1.1	77075
2hcrA	326	57.92		
1j0hA	588	58.20	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
1v9dA	340	58.79	a.207.1.1	100535
1aoiB	87	60.33	a.22.1.1	16470
2fhzA	109	66.45	d.311.1.1	133505
2jzdA	129	68.48		
1e43A	483	78.74	b.71.1.1,c.1.8.1	59217,59218
1f7dA	136	78.82	b.85.4.1	28353
2psoA	237	84.65		
1oksA	56	85.12	a.8.5.1	93271
1dutA	133	86.72	b.85.4.1	28355
1a66A	178	88.52	b.2.5.3	22441