# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vgdA 218 0.6998 1pvxA 194 4.855 b.29.1.11 24341 2z3hA 130 5.826 1qhlA 227 7.690 c.37.1.12 32382 1ynaA 194 9.705 b.29.1.11 24335 3b5lB 198 13.93 2fr5A 146 14.97 c.97.1.1 133965 2joyA 96 16.41 1mdbA 539 16.74 e.23.1.1 79008 1ve4A 206 19.00 c.94.1.1 120012 1f9zA 135 19.77 d.32.1.1 38484 1q7lA 198 20.99 c.56.5.4 96044 1h4rA 314 23.35 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1nijA 318 23.59 c.37.1.10,d.237.1.1 85741,85742 3sgbI 56 24.17 g.68.1.1 44679 1h1aA 191 25.44 b.29.1.11 83450 1ss4A 153 25.83 d.32.1.6 105976 2f06A 144 27.64 d.58.18.11,d.58.18.11 132652,132653 2dcyA 185 27.93 b.29.1.11 131388 1o63A 219 29.05 c.94.1.1 92540 1yt3A 375 29.30 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 2pfyA 301 32.04 2dfbA 190 32.10 b.29.1.11 131470 2qgqA 304 32.12 1lci 550 32.60 1h4gA 207 33.22 b.29.1.11 70863 1sgpI 51 33.72 g.68.1.1 44678 2vjeA 64 33.99 1o4wA 147 34.78 c.120.1.1 86629 2ebuA 112 37.32 1mfgA 95 39.74 b.36.1.1 79043 1svyA 114 40.94 d.109.1.1 40831 1y88A 199 41.40 a.60.4.3,c.52.1.30 116560,116561 1eugA 229 43.29 c.18.1.1 31021 2iwoA 120 43.61 1uq5A 263 44.65 d.165.1.1 99778 2an9A 207 45.11 c.37.1.1 127037 1yu6C 185 45.76 g.68.1.1 124042 1xnb 185 46.01 3cnqP 80 48.05 3c19A 186 48.28 1xnkA 196 50.20 b.29.1.11 122195 1ekxA 311 52.95 c.78.1.1,c.78.1.1 35088,35089 1aw7A 194 53.19 b.40.2.2,d.15.6.1 25164,37753 2fneA 117 54.91 b.36.1.1 133813 1uyjA 296 55.41 f.8.1.2 108143 1p42A 270 55.43 d.14.1.7,d.14.1.7 87754,87755 3cxmA 268 55.66 1z6gA 218 56.83 2egoA 96 56.99 1omhA 293 57.98 d.89.1.5 93348 1pg4A 652 59.83 e.23.1.1 88067 2cb4A 291 61.16 1f1uA 323 61.19 d.32.1.3,d.32.1.3 83200,83201 1cz7A 406 62.24 c.37.1.9 32194 2vjeB 63 63.12 2p25A 126 63.55 1tueB 218 63.70 b.91.1.1 107324 2pfzA 301 63.82 1z70X 311 64.18 d.169.1.7 124581 1r0rI 51 65.67 g.68.1.1 96736 1giqA 413 67.60 d.166.1.1,d.166.1.1 76224,76225 1wn5A 130 68.28 c.97.1.1 121082 1m8jA 181 70.19 c.26.1.3 84875 2ggtA 164 71.09 c.47.1.10 135156 1wdvA 152 71.64 d.116.1.1 114539 2z79A 185 75.28 1x42A 232 75.44 c.108.1.1 121677 2o5fA 171 75.81 2b7kA 200 76.27 c.47.1.10 128042 2pv7A 298 77.42 1f1xA 322 77.87 d.32.1.3,d.32.1.3 83208,83209 3cygA 222 79.28 1btkA 169 80.58 b.55.1.1 26959 1z7kB 62 80.79 g.68.1.1 124631 1im3D 95 81.16 b.1.18.5 62568 1fx7A 230 82.98 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1ecxA 384 84.06 c.67.1.3 34431 1eagA 342 84.59 b.50.1.2 26826 1eg5A 384 84.93 c.67.1.3 34429 1fa8A 135 85.22 d.32.1.1 38486 1ztcA 221 85.77 d.157.1.11 125635 1dkgA 197 86.51 b.73.1.1,h.1.9.1 27812,45626 1f5jA 199 87.75 b.29.1.11 24342 2pd2A 108 88.38