# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g64A	140	8.009	d.96.1.2	134694
1h4gA	207	11.36	b.29.1.11	70863
1f5jA	199	19.68	b.29.1.11	24342
1tcvA	287	22.17		
1h3gA	601	23.35	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
2ictA	94	35.27		
1v9tA	166	36.07	b.62.1.1	108451
1lopA	164	38.73	b.62.1.1	27510
1v5xA	203	41.82	c.1.2.4	100377
2e67A	264	42.54		
1ynaA	194	43.05	b.29.1.11	24335
2c3gA	98	49.05		
2bmbA	545	50.09		
2vgdA	218	52.01		
1utyA	187	54.86	b.147.1.1	108036
2nn8A	138	55.93	b.29.1.3	138392
1pvxA	194	60.30	b.29.1.11	24341
1u3dA	509	60.96	a.99.1.1,c.28.1.1	107638,107639
2qguA	211	62.29		
2dtjA	178	62.44		
1vkrA	125	63.46	c.44.2.1	108689
2yzjA	169	63.48		
2a4vA	159	64.34	c.47.1.10	126163
3cecA	104	66.62		
1meoA	209	72.13	c.65.1.1	79035
2cwzA	141	74.88	d.38.1.7	130961
1b66A	140	74.98	d.96.1.2	40657
1j0hA	588	79.23	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2pt0A	340	82.13		
1xnkA	196	84.18	b.29.1.11	122195
1q5yA	85	87.89	d.58.18.4	95950