# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1h3gA	601	3.407	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
1tcvA	287	5.829		
1v5xA	203	9.413	c.1.2.4	100377
2g64A	140	11.40	d.96.1.2	134694
1j0hA	588	11.76	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2e67A	264	13.05		
1jkxA	212	16.78	c.65.1.1	66813
2dtjA	178	18.67		
2e8yA	718	18.87		
1bli	483	20.01		
1e43A	483	21.12	b.71.1.1,c.1.8.1	59217,59218
2aaaA	484	22.38	b.71.1.1,c.1.8.1	27777,28764
1meoA	209	22.51	c.65.1.1	79035
2ictA	94	24.10		
2ywrA	216	24.92		
1bplB	294	25.84	b.71.1.1	27716
2bmbA	545	26.18		
3bc9A	599	37.01		
2qguA	211	37.66		
1wnyA	186	38.11		
1iloA	77	40.84	c.47.1.1	66205
7taa	478	41.78		
3cecA	104	42.24		
1ht6A	405	42.48	b.71.1.1,c.1.8.1	83629,83630
1jdcA	429	42.99	b.71.1.1,c.1.8.1	27789,28776
2hyxA	352	45.10		
2oblA	347	51.06		
2gp5A	349	52.87		
1j77A	209	54.77	a.132.1.2	62674
2a4vA	159	57.20	c.47.1.10	126163
2nqrA	411	58.41	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1j93A	353	59.72	c.1.22.1	66454
1gcyA	527	60.66	b.71.1.1,c.1.8.1	27788,28775
1r3sA	367	63.65	c.1.22.1	96963
2blnA	305	66.11	b.46.1.1,c.65.1.1	128734,128735
1pa1A	310	68.25	c.45.1.2	94404
1yozA	116	71.70	a.253.1.1	123796
1vkrA	125	72.85	c.44.2.1	108689
1fmtA	314	74.50	b.46.1.1,c.65.1.1	25758,34174
2vkjA	106	76.37		
2f71A	298	78.96	c.45.1.2	133070
2guyA	478	79.14	b.71.1.1,c.1.8.1	135754,135755
2vjxA	846	85.21		
2d28C	149	85.31		
3ctzA	623	85.67		
1t8sA	484	89.10	c.56.2.1	106679