# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s3qA	173	10.62	a.25.1.1	118848
2g64A	140	12.14	d.96.1.2	134694
2ictA	94	12.89		
2qguA	211	15.40		
3cecA	104	16.99		
1krqA	167	20.34	a.25.1.1	68855
1ou0A	207	28.91	c.23.17.1	93536
2fnjC	96	35.19	d.42.1.1	133820
2nqrA	411	35.94	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1w6nA	134	39.44	b.29.1.3	114275
2ftsA	419	47.54	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1j0hA	588	60.30	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2dj6A	115	60.33		
1lm8C	96	67.39	d.42.1.1	74034
1h4gA	207	71.30	b.29.1.11	70863
1f5jA	199	72.19	b.29.1.11	24342
2nn8A	138	72.38	b.29.1.3	138392
1e43A	483	80.30	b.71.1.1,c.1.8.1	59217,59218
1g2qA	187	80.93	c.61.1.1	65117
2dsmA	72	87.16		
1jxcA	68	88.16	g.3.7.5	77201
2r85A	334	88.81