# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2olnA 397 1.672 1pg4A 652 4.589 e.23.1.1 88067 2ef5A 290 4.979 1eg5A 384 5.576 c.67.1.3 34429 1v5xA 203 5.665 c.1.2.4 100377 2bmbA 545 6.140 2qguA 211 6.907 1jdwA 423 8.345 d.126.1.2 41129 2uwxA 494 10.28 e.3.1.1 140002 2z2uA 311 12.63 1f75A 249 12.90 c.101.1.1 59662 1reqB 637 13.01 c.1.19.1,c.23.6.1 29621,31248 3ctzA 623 13.59 1hzoA 271 15.76 e.3.1.1 71092 1ecfA 504 16.11 c.61.1.1,d.153.1.1 34053,41820 1tcvA 287 16.45 1vjtA 483 17.06 c.2.1.5,d.162.1.2 100833,100834 2hx1A 284 17.14 2oc3A 303 17.95 2yv8A 164 18.11 3b9jC 763 18.75 1zv9A 172 19.63 b.2.2.2 125700 1k0fA 277 20.12 c.92.2.2 71974 3bsoA 510 20.26 1utyA 187 21.05 b.147.1.1 108036 1s5aA 150 21.73 d.17.4.10 98525 2yrrA 353 23.59 2ictA 94 25.01 2v7kA 361 25.38 1j77A 209 25.45 a.132.1.2 62674 2v74B 346 27.27 2ac7A 235 31.14 c.56.2.1 126543 2cfeA 162 31.49 b.62.1.1 130375 3c9uA 342 31.93 1ct9A 553 33.25 c.26.2.1,d.153.1.1 31616,41834 1jc4A 148 35.31 d.32.1.4 62863 2g8cO 251 36.28 2gaxA 135 36.36 2cvxA 888 36.95 2hyxA 352 37.45 3cecA 104 38.36 1topA 162 38.46 a.39.1.5 17223 1f5jA 199 38.76 b.29.1.11 24342 1h4gA 207 39.68 b.29.1.11 70863 1px5A 349 41.38 a.160.1.2,d.218.1.6 95277,95278 1wnyA 186 42.97 1r2zA 274 43.07 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1ynaA 194 44.77 b.29.1.11 24335 2bibA 547 45.69 b.109.1.1,d.157.1.8 128581,128582 1zd0A 150 47.35 d.329.1.1 124927 1t9bA 677 48.34 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1pjxA 314 49.54 b.68.6.1 104167 2jdxA 385 50.29 d.126.1.2 41139 2gxaA 274 50.41 2fauA 341 50.75 2e9xD 223 53.23 2rfmA 192 53.75 1lm8C 96 55.01 d.42.1.1 74034 2i3oA 516 56.56 d.153.1.6 137027 1xd3A 230 57.52 d.3.1.6 115145 2i5vO 251 58.59 1llaA 628 58.76 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1xfsA 178 59.78 d.129.3.5 109589 2p4pA 86 61.24 2dnjA 260 62.00 d.151.1.1 41790 1t70A 255 62.34 d.159.1.9 112275 2rmcA 182 64.61 b.62.1.1 27491 1yjsA 419 64.79 c.67.1.4 123461 1nsj 205 64.87 1udzA 182 68.25 b.51.1.1 99239 3c0wA 235 68.70 1r42A 615 68.81 d.92.1.5 96968 1wu2A 396 68.84 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1wb0A 445 69.39 c.1.8.5,d.26.3.1 120825,120826 2hxsA 178 70.65 1byi 224 70.70 1atg 231 73.19 2a9gA 418 73.80 d.126.1.4 126435 2dj6A 115 74.05 2i33A 258 76.86 2e7jA 371 77.51 1w6vA 141 77.66 d.324.1.1 120674 2dpmA 284 79.02 c.66.1.28 34246 1ynpA 317 79.92 1vns 609 80.37 2cbiA 594 81.26 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2g47A 990 81.38 3gcbA 470 81.84 d.3.1.1 37032 1mi3A 322 82.66 c.1.7.1 91274 2fnjC 96 82.77 d.42.1.1 133820 2ftsA 419 84.49 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 3bcwA 123 85.11 1iu4A 331 85.18 d.3.1.8 71430 1fiqC 763 86.41 d.41.1.1,d.133.1.1 38588,41418 2c8eE 211 87.07 1o0xA 262 87.94 d.127.1.1 80755 1xttA 216 88.05 c.61.1.1 122300 2a4vA 159 88.83 c.47.1.10 126163 1lvlA 458 88.89 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1d3cA 686 89.17 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2f9lA 199 89.87 c.37.1.8 133166