# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1h3gA	601	9.756	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
2g64A	140	11.87	d.96.1.2	134694
2dtjA	178	33.30		
1j0hA	588	34.63	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2ictA	94	36.62		
2e67A	264	37.70		
1h4gA	207	45.01	b.29.1.11	70863
1tcvA	287	47.17		
1utyA	187	49.85	b.147.1.1	108036
1jkxA	212	50.22	c.65.1.1	66813
2pt0A	340	51.45		
2bmbA	545	52.55		
2c3gA	98	54.24		
1meoA	209	54.54	c.65.1.1	79035
2qguA	211	54.66		
1vkrA	125	68.98	c.44.2.1	108689
1v5xA	203	69.01	c.1.2.4	100377
1v9tA	166	70.39	b.62.1.1	108451
1e43A	483	72.15	b.71.1.1,c.1.8.1	59217,59218
3cecA	104	73.47		
2e8yA	718	74.03		
1bli	483	77.32		
2gaxA	135	79.65		
1f5jA	199	80.52	b.29.1.11	24342
2r5kA	424	81.50		
1v4sA	455	82.73	c.55.1.3,c.55.1.3	100309,100310
2a4vA	159	83.92	c.47.1.10	126163