# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u34A	119	3.740	g.76.1.1	107634
2dsmA	72	5.960		
1tyjA	170	8.111	b.2.2.2	119390
1ztsA	139	9.930		
1s3qA	173	14.94	a.25.1.1	118848
2bm3A	166	20.73	b.2.2.2	128762
2hjqA	111	23.39		
2axwA	134	24.43		
2cwzA	141	24.64	d.38.1.7	130961
1g2qA	187	27.75	c.61.1.1	65117
2gaxA	135	27.98		
2ftsA	419	28.05	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1j77A	209	28.09	a.132.1.2	62674
2ffmA	91	28.83	d.267.1.1	133389
1vkrA	125	29.58	c.44.2.1	108689
2hxjA	144	33.39		
2nqrA	411	34.62	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
2r85A	334	36.95		
2f60K	64	42.68		
1krqA	167	44.05	a.25.1.1	68855
2jn9A	105	44.31		
2hzsI	27	45.89		
2pmiB	293	47.69		
1w33A	181	48.23		
2ictA	94	49.61		
2hiqA	113	49.72	d.58.4.12	136529
1cktA	71	50.01	a.21.1.1	16417
2pt0A	340	53.10		
2c3gA	98	54.13		
1wd6A	123	56.57	d.58.4.12	114525
2b7kA	200	66.77	c.47.1.10	128042
1uz5A	402	68.87	b.85.6.1,b.103.1.1,c.57.1.2	100217,100218,100219
3cecA	104	71.35		
2qguA	211	72.64		
1vrvA	101	75.74		
1wnyA	186	76.78		
1q5yA	85	76.99	d.58.18.4	95950
2nn8A	138	77.24	b.29.1.3	138392
1w6nA	134	81.62	b.29.1.3	114275
2b9eA	303	81.75	c.66.1.38	128124
2vdwB	287	84.75		
1wijA	140	86.07	a.140.5.1	114674
1f5jA	199	87.44	b.29.1.11	24342
1chuA	540	89.88	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307