# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vgdA 218 1.092 1xynA 178 2.923 b.29.1.11 24322 1ynaA 194 3.046 b.29.1.11 24335 1f9zA 135 3.788 d.32.1.1 38484 1l8rA 101 5.295 a.6.1.4 73700 1ztcA 221 5.478 d.157.1.11 125635 3b5lB 198 5.757 2jsoA 88 6.498 1pvxA 194 7.039 b.29.1.11 24341 1ss4A 153 8.350 d.32.1.6 105976 2rk0A 136 9.135 2dcyA 185 9.329 b.29.1.11 131388 2fkbA 180 10.36 d.113.1.2 133650 1mdbA 539 12.39 e.23.1.1 79008 2dfbA 190 13.08 b.29.1.11 131470 1nijA 318 15.41 c.37.1.10,d.237.1.1 85741,85742 1lu4A 136 16.05 c.47.1.10 91124 1cliA 345 16.54 d.79.4.1,d.139.1.1 39816,41459 1g2qA 187 17.10 c.61.1.1 65117 2vccA 891 17.19 1xnkA 196 18.31 b.29.1.11 122195 2z3hA 130 20.24 2ebuA 112 20.35 2p25A 126 21.71 2joyA 96 22.08 1h4rA 314 24.72 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 3ck2A 176 25.66 2fclA 169 26.27 d.218.1.11 133273 1h4gA 207 27.03 b.29.1.11 70863 2c21A 144 27.48 d.32.1.1 129649 2f06A 144 27.87 d.58.18.11,d.58.18.11 132652,132653 2fr5A 146 31.54 c.97.1.1 133965 1ecsA 126 32.40 d.32.1.2 59407 1sjwA 144 33.02 d.17.4.9 98899 1z70X 311 33.06 d.169.1.7 124581 1oa4A 222 33.46 b.29.1.11 86731 2jh1A 246 33.62 1t0fA 276 34.81 a.4.5.27,c.52.1.16 112195,112196 1f9aA 168 36.07 c.26.1.3 31602 2z79A 185 38.86 2r0cA 549 39.86 1fa8A 135 40.90 d.32.1.1 38486 2jyaA 106 42.23 1s99A 200 42.54 d.58.48.2 112046 1wn5A 130 43.45 c.97.1.1 121082 1bxoA 323 47.37 b.50.1.2 26805 1el6A 219 47.40 d.182.1.1 42606 1w8oA 601 49.74 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1dpjA 329 49.74 b.50.1.2 26828 1yg9A 330 50.13 2qgqA 304 51.53 1r4pA 297 51.94 d.165.1.2 97025 3c8wA 255 55.97 2a6tA 271 56.26 a.242.1.1,d.113.1.7 126309,126310 1ve4A 206 56.96 c.94.1.1 120012 1y88A 199 59.88 a.60.4.3,c.52.1.30 116560,116561 2ggtA 164 60.01 c.47.1.10 135156 1o63A 219 60.14 c.94.1.1 92540 1y4jA 284 61.87 d.169.1.7 122620 2eq9C 41 62.30 2fneA 117 64.45 b.36.1.1 133813 3c96A 415 67.01 1h70A 255 68.85 d.126.1.3 60711 3ovoA 56 71.19 g.68.1.1 44696 2hxrA 238 72.53 1z7kB 62 72.81 g.68.1.1 124631 2nvmA 126 74.11 d.326.1.1 138631 1f1uA 323 75.49 d.32.1.3,d.32.1.3 83200,83201 1yzyA 413 75.78 c.146.1.1 124292 1giqA 413 76.27 d.166.1.1,d.166.1.1 76224,76225 1uthA 315 76.58 c.94.1.1 108032 1scjB 71 76.83 d.58.3.2 39069 2uyeA 307 77.31 1wdvA 152 77.96 d.116.1.1 114539 1zg2A 107 78.69 2hhiA 204 79.25 2dmiA 115 79.54 2egoA 96 80.38 1q7lA 198 80.64 c.56.5.4 96044 3c2iA 97 83.05 1r0rI 51 86.49 g.68.1.1 96736 1t1vA 93 86.95 c.47.1.14 106278 1k6zA 141 89.63 d.198.1.1 68247 1rl3A 288 89.74 b.82.3.2,b.82.3.2 104975,104976