# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	8.518	b.71.1.1	27716
1u0jA	267	10.38	c.37.1.20	107546
1x3zB	72	18.74	a.189.1.1	121674
2g64A	140	23.71	d.96.1.2	134694
2ictA	94	30.47		
2c3gA	98	37.46		
1f5jA	199	40.33	b.29.1.11	24342
1b66A	140	43.01	d.96.1.2	40657
2e67A	264	46.00		
1meoA	209	53.27	c.65.1.1	79035
3cecA	104	57.21		
1bli	483	66.24		
1pvxA	194	70.85	b.29.1.11	24341
1thfD	253	71.43	c.1.2.1	28535
1nwwA	149	72.42	d.17.4.8	86306
2p17A	277	73.23		
3bc9A	599	73.32		
3cedA	98	74.21		
1j3wA	163	74.69	d.110.7.1	90833
1ea9C	583	74.97	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
2no4A	240	76.86		
1h1aA	191	77.57	b.29.1.11	83450
1km4A	247	78.36	c.1.2.3	72740
1v9tA	166	79.81	b.62.1.1	108451
1dvjA	246	81.52	c.1.2.3	28546
1qyiA	384	82.14	c.108.1.13	96595
1auvA	311	85.27	c.30.1.5,d.142.1.3	31723,41558
2dtjA	178	86.12