# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	10.03	b.71.1.1	27716
1u0jA	267	18.61	c.37.1.20	107546
2c3gA	98	25.63		
2g64A	140	26.13	d.96.1.2	134694
1x3zB	72	26.95	a.189.1.1	121674
1meoA	209	33.12	c.65.1.1	79035
1f5jA	199	35.35	b.29.1.11	24342
3bc9A	599	38.71		
1bli	483	42.01		
1h1aA	191	43.47	b.29.1.11	83450
2ictA	94	43.91		
2e67A	264	49.12		
1pvxA	194	50.73	b.29.1.11	24341
1nwwA	149	50.77	d.17.4.8	86306
1jkxA	212	56.26	c.65.1.1	66813
2d6mA	159	56.61		
1ea9C	583	63.20	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1b66A	140	65.20	d.96.1.2	40657
1h4gA	207	66.82	b.29.1.11	70863
1j3wA	163	70.01	d.110.7.1	90833
1ynaA	194	73.61	b.29.1.11	24335
2p17A	277	76.72		
2g17A	337	80.53	c.2.1.3,d.81.1.1	134512,134513
3cecA	104	80.97		
2gar	212	81.45		
1jmvA	141	84.62	c.26.2.4	66897
2dtjA	178	86.89