# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bplB 294 2.506 b.71.1.1 27716 1meoA 209 10.01 c.65.1.1 79035 1jkxA 212 11.28 c.65.1.1 66813 3bc9A 599 14.41 1bli 483 16.92 2dtjA 178 22.20 2gar 212 23.29 2g64A 140 23.67 d.96.1.2 134694 3dfrA 162 25.25 c.71.1.1 34880 2ywrA 216 26.85 1tg7A 971 30.99 b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14 112418,112419,112420,112421,112422 2e67A 264 31.54 2aaaA 484 34.02 b.71.1.1,c.1.8.1 27777,28764 1evlA 401 35.47 c.51.1.1,d.104.1.1 33202,40751 1j3wA 163 37.42 d.110.7.1 90833 2ictA 94 40.16 2f7fA 494 40.54 c.1.17.1,d.41.2.1 133088,133089 1jdcA 429 40.98 b.71.1.1,c.1.8.1 27789,28776 1nsjA 205 41.08 c.1.2.4 28560 1thfD 253 41.73 c.1.2.1 28535 1iloA 77 42.20 c.47.1.1 66205 2blnA 305 44.50 b.46.1.1,c.65.1.1 128734,128735 1ht6A 405 47.33 b.71.1.1,c.1.8.1 83629,83630 1j77A 209 49.82 a.132.1.2 62674 1ea9C 583 49.85 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1x3zB 72 56.18 a.189.1.1 121674 1fmtA 314 56.33 b.46.1.1,c.65.1.1 25758,34174 2vkjA 106 56.41 1nsj 205 56.77 1b66A 140 56.97 d.96.1.2 40657 1vh7A 265 60.61 c.1.2.1 100646 2hr7A 486 63.07 1uroA 367 63.81 c.1.22.1 29675 3cecA 104 67.05 2g17A 337 70.12 c.2.1.3,d.81.1.1 134512,134513 2guyA 478 71.04 b.71.1.1,c.1.8.1 135754,135755 1v32A 101 71.99 a.42.1.1 100277 1tqjA 230 72.40 c.1.2.2 107228 7taa 478 73.13 1brwA 433 74.16 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1jmvA 141 74.53 c.26.2.4 66897 1km4A 247 74.64 c.1.2.3 72740 1b8oA 284 75.52 c.56.2.1 33762 1e43A 483 79.94 b.71.1.1,c.1.8.1 59217,59218 1fs1B 141 84.04 a.157.1.1,d.42.1.1 19252,38664 1yozA 116 86.08 a.253.1.1 123796 1v4sA 455 86.81 c.55.1.3,c.55.1.3 100309,100310 1tcvA 287 86.88 2q71A 356 87.88 1r2mA 71 89.04 b.138.1.1 96871 1j93A 353 89.60 c.1.22.1 66454