# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	5.080	b.71.1.1	27716
1u0jA	267	10.02	c.37.1.20	107546
2g64A	140	20.91	d.96.1.2	134694
1bli	483	27.95		
1x3zB	72	29.85	a.189.1.1	121674
2e67A	264	36.82		
1meoA	209	38.30	c.65.1.1	79035
3bc9A	599	40.07		
1j3wA	163	43.74	d.110.7.1	90833
1oksA	56	43.97	a.8.5.1	93271
1b66A	140	45.66	d.96.1.2	40657
3cecA	104	48.18		
2c3gA	98	49.48		
1fs1B	141	50.44	a.157.1.1,d.42.1.1	19252,38664
1dvjA	246	57.72	c.1.2.3	28546
2ictA	94	60.04		
1x3kA	152	60.14		
1ea9C	583	62.27	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1km4A	247	64.52	c.1.2.3	72740
1f5jA	199	66.09	b.29.1.11	24342
1jmvA	141	66.66	c.26.2.4	66897
1jkxA	212	70.88	c.65.1.1	66813
1auvA	311	75.25	c.30.1.5,d.142.1.3	31723,41558
1t01A	255	77.04	a.24.9.1,a.24.9.1	106188,106189
2dtjA	178	78.96		
1j77A	209	79.13	a.132.1.2	62674
2gar	212	84.25		
1ytw	306	85.47