# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	8.539	b.71.1.1	27716
1u0jA	267	17.86	c.37.1.20	107546
2g64A	140	21.81	d.96.1.2	134694
1x3zB	72	28.39	a.189.1.1	121674
1oksA	56	35.26	a.8.5.1	93271
3cecA	104	37.76		
1meoA	209	42.62	c.65.1.1	79035
2ictA	94	47.69		
1b66A	140	49.76	d.96.1.2	40657
1f5jA	199	51.88	b.29.1.11	24342
2e67A	264	53.13		
1bli	483	54.41		
2c3gA	98	57.88		
1j3wA	163	62.35	d.110.7.1	90833
1t01A	255	68.67	a.24.9.1,a.24.9.1	106188,106189
3bc9A	599	69.78		
1dvjA	246	70.59	c.1.2.3	28546
1fs1B	141	72.27	a.157.1.1,d.42.1.1	19252,38664
2dj6A	115	78.14		
2g17A	337	80.02	c.2.1.3,d.81.1.1	134512,134513
1jkxA	212	81.36	c.65.1.1	66813
1jmvA	141	81.71	c.26.2.4	66897
1pvxA	194	83.10	b.29.1.11	24341
1auvA	311	85.38	c.30.1.5,d.142.1.3	31723,41558