# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x3zB	72	7.814	a.189.1.1	121674
1bplB	294	8.911	b.71.1.1	27716
1dvjA	246	15.24	c.1.2.3	28546
1v9dA	340	16.26	a.207.1.1	100535
2ictA	94	16.43		
3cecA	104	22.36		
1t3gA	159	22.68		
1km4A	247	25.24	c.1.2.3	72740
1fs1B	141	25.61	a.157.1.1,d.42.1.1	19252,38664
3bc9A	599	26.99		
1qyiA	384	36.25	c.108.1.13	96595
1eumA	165	41.28	a.25.1.1	59507
2im5A	394	41.63		
1x3kA	152	42.76		
2ebyA	113	43.12		
1bli	483	45.73		
2p17A	277	46.67		
1xfrA	128	48.17		
1oksA	56	56.07	a.8.5.1	93271
1u0jA	267	59.82	c.37.1.20	107546
2c3gA	98	64.13		
2g64A	140	66.73	d.96.1.2	134694
1j8yF	297	68.94	a.24.13.1,c.37.1.10	62747,62748
2e67A	264	69.88		
2ffmA	91	72.18	d.267.1.1	133389
1auvA	311	72.73	c.30.1.5,d.142.1.3	31723,41558
1s3qA	173	76.97	a.25.1.1	118848
1uptB	60	77.73	a.193.1.1	99768
2ar0A	541	79.30	c.66.1.45	127185
2dj6A	115	80.11		
1jxcA	68	81.31	g.3.7.5	77201
1tyjA	170	86.32	b.2.2.2	119390
1ea9C	583	89.49	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089