# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	8.588	b.71.1.1	27716
1u0jA	267	20.28	c.37.1.20	107546
2ictA	94	23.60		
2g64A	140	30.66	d.96.1.2	134694
1x3zB	72	31.35	a.189.1.1	121674
2e67A	264	39.67		
3cecA	104	44.78		
1bli	483	46.37		
1auvA	311	49.67	c.30.1.5,d.142.1.3	31723,41558
1thfD	253	51.69	c.1.2.1	28535
1meoA	209	51.89	c.65.1.1	79035
3bc9A	599	60.26		
1km4A	247	72.56	c.1.2.3	72740
2p17A	277	73.69		
1dvjA	246	73.74	c.1.2.3	28546
2g17A	337	80.13	c.2.1.3,d.81.1.1	134512,134513
1vh7A	265	81.23	c.1.2.1	100646
1x3kA	152	82.87		
1b66A	140	84.03	d.96.1.2	40657
2dj6A	115	86.90		
2c3gA	98	89.80