# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pg4A 652 0.9746 e.23.1.1 88067 1c3hA 137 5.388 b.22.1.1 90405 1eg5A 384 7.205 c.67.1.3 34429 2atfA 200 7.606 b.82.1.19 127290 1j3wA 163 8.602 d.110.7.1 90833 1u0jA 267 10.51 c.37.1.20 107546 1x3zB 72 10.88 a.189.1.1 121674 2yv8A 164 10.93 2v7kA 361 11.03 2aamA 309 11.26 c.1.8.15 126489 1byi 224 12.52 1nsj 205 13.37 1zv9A 172 14.62 b.2.2.2 125700 1s5aA 150 14.77 d.17.4.10 98525 1nsjA 205 16.16 c.1.2.4 28560 2p17A 277 18.83 2ictA 94 20.99 1wu2A 396 21.30 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1jvsA 400 22.15 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1v5xA 203 22.40 c.1.2.4 100377 2yxxA 386 23.32 1udzA 182 24.90 b.51.1.1 99239 1je0A 236 25.38 c.56.2.1 66581 1k20A 310 26.54 c.107.1.1 68027 1jdw 423 26.70 1peqA 714 27.42 a.98.1.1,c.7.1.2 104131,104132 2olnA 397 27.58 2bx2L 517 28.25 2bjfA 329 29.31 1qyiA 384 30.38 c.108.1.13 96595 2ef5A 290 31.11 2jg0A 535 31.25 1f5jA 199 31.71 b.29.1.11 24342 3cecA 104 32.50 2c3gA 98 32.56 2fauA 341 33.31 1f75A 249 34.36 c.101.1.1 59662 1thfD 253 34.98 c.1.2.1 28535 1k1eA 180 36.25 c.108.1.5 67995 2gaxA 135 38.75 1r2zA 274 38.93 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1de4C 640 40.20 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1fs1B 141 41.40 a.157.1.1,d.42.1.1 19252,38664 1lm8C 96 41.60 d.42.1.1 74034 1jdwA 423 41.74 d.126.1.2 41129 1dvjA 246 42.01 c.1.2.3 28546 1ynaA 194 42.74 b.29.1.11 24335 1pvxA 194 43.26 b.29.1.11 24341 2yw2A 424 44.84 2p71A 132 44.98 a.39.2.1 139516 2i3oA 516 45.38 d.153.1.6 137027 2j0fA 482 47.69 1qe3A 489 51.10 c.69.1.1 34630 1bplB 294 51.95 b.71.1.1 27716 1elqA 390 51.99 c.67.1.3 34436 2jdxA 385 53.67 d.126.1.2 41139 1yge 839 53.91 2e9xD 223 53.94 2qguA 211 54.20 2p4pA 86 55.67 2gxaA 274 56.82 1b6a 478 59.85 2e67A 264 60.00 1nfkA 325 60.12 b.1.18.1,b.2.5.3 21929,22444 1wdpA 495 60.97 c.1.8.1 120907 2v7bA 529 61.44 1reqB 637 61.95 c.1.19.1,c.23.6.1 29621,31248 2yweA 600 62.28 1qwzA 235 62.32 b.100.1.1 96510 1gox 370 69.93 1iu4A 331 70.63 d.3.1.8 71430 2basA 431 72.83 c.1.33.1,d.110.6.2 128244,128245 2hr7A 486 74.87 1v0wA 506 76.91 d.136.1.2,d.136.1.2 108220,108221 1r2mA 71 78.16 b.138.1.1 96871 2bsxA 253 78.16 c.56.2.1 129128 1h75A 81 78.61 c.47.1.1 60716 2f7fA 494 78.71 c.1.17.1,d.41.2.1 133088,133089 1h1aA 191 78.93 b.29.1.11 83450 1ex0A 731 79.46 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 3dfrA 162 79.88 c.71.1.1 34880 1nwwA 149 79.94 d.17.4.8 86306 1rhfA 182 80.73 b.1.1.1,b.1.1.4 97469,97470 1nvmA 345 81.52 a.5.7.1,c.1.10.5 86249,86250 1cjcA 460 84.21 c.3.1.1,c.4.1.1 30319,30604 2dj6A 115 84.50 1n69A 81 84.97 a.64.1.3 80118 1y6zA 263 86.66 2hxvA 360 87.41 c.71.1.2,c.97.1.2 136859,136860 1juhA 350 87.74 b.82.1.5 71884 3b9oA 440 87.93 1o0xA 262 88.78 d.127.1.1 80755 2oc3A 303 89.90