# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	8.141	b.71.1.1	27716
1u0jA	267	11.43	c.37.1.20	107546
1x3zB	72	17.84	a.189.1.1	121674
2c3gA	98	19.75		
2g64A	140	24.10	d.96.1.2	134694
1f5jA	199	33.58	b.29.1.11	24342
1fs1B	141	47.60	a.157.1.1,d.42.1.1	19252,38664
3bc9A	599	49.16		
2ictA	94	49.42		
1ea9C	583	50.30	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1j3wA	163	50.99	d.110.7.1	90833
1bli	483	51.00		
1meoA	209	53.50	c.65.1.1	79035
1t01A	255	60.16	a.24.9.1,a.24.9.1	106188,106189
1oksA	56	62.60	a.8.5.1	93271
1pvxA	194	69.12	b.29.1.11	24341
1b66A	140	69.95	d.96.1.2	40657
1x3kA	152	70.79		
1h1aA	191	72.55	b.29.1.11	83450
1jkxA	212	73.52	c.65.1.1	66813
2no4A	240	77.06		
2e67A	264	77.11		
1c1lA	136	78.38	b.29.1.3	24219
1nwwA	149	78.87	d.17.4.8	86306
1dvjA	246	79.15	c.1.2.3	28546
2dtjA	178	83.63		
2p17A	277	84.83		
3cecA	104	85.74		
1km4A	247	88.28	c.1.2.3	72740
2dj6A	115	88.44