# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	4.168	b.71.1.1	27716
1x3zB	72	19.63	a.189.1.1	121674
1bli	483	22.81		
3bc9A	599	24.14		
1meoA	209	26.93	c.65.1.1	79035
2g64A	140	27.03	d.96.1.2	134694
1u0jA	267	30.18	c.37.1.20	107546
1jkxA	212	33.45	c.65.1.1	66813
1fs1B	141	37.71	a.157.1.1,d.42.1.1	19252,38664
2ictA	94	41.19		
2dtjA	178	45.81		
2e67A	264	49.42		
1oksA	56	51.48	a.8.5.1	93271
1j3wA	163	51.99	d.110.7.1	90833
2c3gA	98	52.75		
1ea9C	583	52.77	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
2gar	212	53.15		
1tg7A	971	63.40	b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14	112418,112419,112420,112421,112422
1thfD	253	69.67	c.1.2.1	28535
1km4A	247	70.19	c.1.2.3	72740
1x3kA	152	70.25		
1dvjA	246	77.38	c.1.2.3	28546
1jmvA	141	78.20	c.26.2.4	66897
1b66A	140	79.89	d.96.1.2	40657
1jdcA	429	80.52	b.71.1.1,c.1.8.1	27789,28776
1t01A	255	80.85	a.24.9.1,a.24.9.1	106188,106189
3dfrA	162	82.96	c.71.1.1	34880
2p17A	277	83.16		
2f7fA	494	84.23	c.1.17.1,d.41.2.1	133088,133089
2iu4A	336	89.43