# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	9.278	b.71.1.1	27716
1u0jA	267	12.30	c.37.1.20	107546
2g64A	140	19.53	d.96.1.2	134694
1x3zB	72	24.22	a.189.1.1	121674
2c3gA	98	29.32		
1meoA	209	30.18	c.65.1.1	79035
1jkxA	212	33.90	c.65.1.1	66813
1tg7A	971	39.32	b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14	112418,112419,112420,112421,112422
3bc9A	599	41.40		
1j3wA	163	42.00	d.110.7.1	90833
1x3kA	152	45.21		
1dvjA	246	46.78	c.1.2.3	28546
2e67A	264	51.56		
1bli	483	51.76		
2ictA	94	54.42		
1b66A	140	56.06	d.96.1.2	40657
1km4A	247	56.21	c.1.2.3	72740
2gar	212	57.68		
1oksA	56	63.33	a.8.5.1	93271
2f7fA	494	65.64	c.1.17.1,d.41.2.1	133088,133089
2p17A	277	66.93		
1fs1B	141	68.14	a.157.1.1,d.42.1.1	19252,38664
3dfrA	162	74.02	c.71.1.1	34880
1c1lA	136	74.85	b.29.1.3	24219
2dtjA	178	75.50		
1t01A	255	77.94	a.24.9.1,a.24.9.1	106188,106189
1thfD	253	80.30	c.1.2.1	28535
1v32A	101	83.23	a.42.1.1	100277
2dj6A	115	85.28