# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qyiA	384	14.12	c.108.1.13	96595
2dsmA	72	14.35		
1fs1B	141	17.60	a.157.1.1,d.42.1.1	19252,38664
1ztsA	139	17.91		
2ffmA	91	19.05	d.267.1.1	133389
1x3zB	72	19.15	a.189.1.1	121674
1v9dA	340	19.28	a.207.1.1	100535
2p17A	277	22.78		
1v32A	101	23.29	a.42.1.1	100277
1auvA	311	25.05	c.30.1.5,d.142.1.3	31723,41558
2c3gA	98	25.40		
1tyjA	170	26.02	b.2.2.2	119390
1oksA	56	28.20	a.8.5.1	93271
2axwA	134	29.43		
2hjqA	111	33.91		
2bm3A	166	34.76	b.2.2.2	128762
1j47A	85	35.05	a.21.1.1	66373
1x3kA	152	35.48		
2ftsA	419	38.24	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
2jn9A	105	40.52		
1bplB	294	43.82	b.71.1.1	27716
1q5yA	85	47.73	d.58.18.4	95950
1mpxA	615	50.28	b.18.1.13,c.69.1.21	85041,85042
2f60K	64	52.78		
1ro0A	216	53.18	d.264.1.2	97664
2gaxA	135	56.78		
1p9kA	79	58.60	d.66.1.6	94392
2b59A	187	59.46	b.2.2.2	127879
2hiqA	113	60.94	d.58.4.12	136529
2ez6A	221	62.25	a.149.1.1,d.50.1.1	132616,132617
1wgsA	133	62.67	b.34.13.3	114622
1eumA	165	63.94	a.25.1.1	59507
1jfzA	154	64.17	a.149.1.1	66655
1tbxA	99	64.56	a.4.5.48	106748
1xfrA	128	65.96		
2im5A	394	70.77		
1l1qA	186	74.22	c.61.1.1	77653
2ictA	94	77.48		
1c1lA	136	78.56	b.29.1.3	24219
1s3qA	173	82.55	a.25.1.1	118848
1wijA	140	83.81	a.140.5.1	114674
2hzsI	27	85.06		
1vkeA	133	85.84	a.152.1.2	108650
2iu4A	336	85.89		
1wcdJ	441	86.44	b.121.4.9	120887