# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bplB	294	11.27	b.71.1.1	27716
1bli	483	11.83		
1fs1B	141	16.27	a.157.1.1,d.42.1.1	19252,38664
3bc9A	599	20.46		
2no4A	240	21.10		
1f5jA	199	29.20	b.29.1.11	24342
2g64A	140	31.36	d.96.1.2	134694
1u0jA	267	32.08	c.37.1.20	107546
1auvA	311	37.89	c.30.1.5,d.142.1.3	31723,41558
1ea9C	583	40.11	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1qyiA	384	42.57	c.108.1.13	96595
1oksA	56	49.73	a.8.5.1	93271
1pvxA	194	53.89	b.29.1.11	24341
2e67A	264	58.10		
1h1aA	191	62.46	b.29.1.11	83450
1cjcA	460	64.25	c.3.1.1,c.4.1.1	30319,30604
2fhzA	109	64.44	d.311.1.1	133505
1k20A	310	65.35	c.107.1.1	68027
1ynaA	194	78.71	b.29.1.11	24335
1t01A	255	80.14	a.24.9.1,a.24.9.1	106188,106189
2p17A	277	80.72		
1tg7A	971	82.03	b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14	112418,112419,112420,112421,112422
1km4A	247	82.12	c.1.2.3	72740
2obaA	138	84.50		
2a4vA	159	85.68	c.47.1.10	126163
1meoA	209	86.37	c.65.1.1	79035
1x3zB	72	86.74	a.189.1.1	121674
1hpcA	131	89.45	b.84.1.1	28221