# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aehA 369 1.177 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 2z3hA 130 8.017 1yb2A 275 8.284 c.66.1.13 122868 1sgpI 51 8.564 g.68.1.1 44678 1f9zA 135 11.18 d.32.1.1 38484 2ggtA 164 11.76 c.47.1.10 135156 2fclA 169 13.37 d.218.1.11 133273 1qhlA 227 13.71 c.37.1.12 32382 1yu6C 185 13.91 g.68.1.1 124042 2jsoA 88 14.61 2vgdA 218 14.61 1zn8A 180 15.21 c.61.1.1 125376 2dy0A 190 17.32 1bxoA 323 18.71 b.50.1.2 26805 1z7kB 62 20.94 g.68.1.1 124631 1t1vA 93 23.19 c.47.1.14 106278 1dpjA 329 23.80 b.50.1.2 26828 1ynaA 194 24.23 b.29.1.11 24335 1tueB 218 26.51 b.91.1.1 107324 2fkbA 180 26.87 d.113.1.2 133650 2ebuA 112 27.43 1scjB 71 27.49 d.58.3.2 39069 1vmkA 277 27.70 c.56.2.1 113680 1z70X 311 28.30 d.169.1.7 124581 1yg9A 330 28.78 2jh1A 246 29.85 1uthA 315 30.12 c.94.1.1 108032 1cliA 345 32.66 d.79.4.1,d.139.1.1 39816,41459 2o5fA 171 34.10 2db1A 118 36.85 2f06A 144 37.82 d.58.18.11,d.58.18.11 132652,132653 2f9sA 151 37.94 c.47.1.10 133168 1wn5A 130 38.51 c.97.1.1 121082 1r0rI 51 39.75 g.68.1.1 96736 1ss4A 153 40.25 d.32.1.6 105976 3cxmA 268 40.96 3ovoA 56 42.94 g.68.1.1 44696 2ewrA 170 43.52 d.218.1.11 132493 1j1qA 261 43.84 d.165.1.1 90768 1s5uA 138 44.65 d.38.1.1 98573 2qgqA 304 46.22 2fr5A 146 46.23 c.97.1.1 133965 1l8rA 101 46.31 a.6.1.4 73700 1g2qA 187 46.90 c.61.1.1 65117 3c2iA 97 48.37 4eugA 229 49.41 c.18.1.1 31019 2a6tA 271 49.52 a.242.1.1,d.113.1.7 126309,126310 1mdbA 539 49.99 e.23.1.1 79008 2pd2A 108 50.36 1qnf 484 51.33 1lu4A 136 51.97 c.47.1.10 91124 2aexA 346 52.82 2esnA 310 52.84 a.4.5.37,c.94.1.1 132333,132334 1h3nA 878 55.36 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1z54A 132 55.55 d.38.1.1 124450 2cjqA 720 57.72 2al6A 375 60.23 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 1v6sA 390 62.09 c.86.1.1 100424 1im3D 95 62.62 b.1.18.5 62568 1xynA 178 62.73 b.29.1.11 24322 2iwoA 120 64.28 2a0iA 330 65.15 2joyA 96 65.64 2hwjA 205 66.14 1p42A 270 66.55 d.14.1.7,d.14.1.7 87754,87755 1h4rA 314 68.35 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 3ck2A 176 69.60 1f1uA 323 71.00 d.32.1.3,d.32.1.3 83200,83201 2uyeA 307 73.53 2eq9C 41 75.27 1l1sA 113 76.00 c.114.1.1 73484 1a8h 500 76.95 2dcyA 185 80.68 b.29.1.11 131388 1q7lA 198 80.80 c.56.5.4 96044 1qfxA 460 82.45 c.60.1.2 33994 1pvxA 194 83.28 b.29.1.11 24341 2v9kA 530 85.83 1ni5A 433 87.92 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2hxrA 238 88.26 2go3A 267 89.09 d.14.1.7,d.14.1.7 135422,135423 1hq8A 123 89.66 d.169.1.1 61127