# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.34e-34 c.107.1.1 68027 1i74A 309 9.20e-33 c.107.1.1 61867 2eb0A 307 2.58e-26 1wpnA 188 7.73e-24 c.107.1.1 114826 1ir6A 424 8.92e-12 c.107.1.2 71342 2qb7A 397 3.40e-09 1yt8A 539 1.503 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1vmeA 410 2.771 c.23.5.1,d.157.1.3 108893,108894 1uwcA 261 2.810 c.69.1.17 100101 2ez9A 603 3.445 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2djiA 590 3.513 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1jpkA 388 3.876 c.1.22.1 67026 1ybhA 590 4.233 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1sviA 195 4.903 c.37.1.8 106048 1zcjA 463 5.243 1tib 269 6.327 2bjhA 260 7.216 1cl1A 395 7.326 c.67.1.3 34395 2q71A 356 7.876 1poxA 585 9.107 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1gt6A 269 9.207 c.69.1.17 76342 2fz4A 237 9.594 c.37.1.19 134419 3brsA 289 9.97 1uswA 260 10.02 c.69.1.17 99895 1v8bA 479 11.59 c.2.1.4,c.23.12.3 113564,113565 2o35A 105 13.04 1tedA 393 14.99 c.95.1.2 106807 1gc0A 398 15.64 c.67.1.3 70168 1th8B 116 15.72 c.13.2.1 106909 1fc4A 401 16.39 c.67.1.4 59760 1xqwA 293 16.43 1ra0A 430 16.64 b.92.1.2,c.1.9.5 111756,111757 1xwfA 431 16.68 c.2.1.4,c.23.12.3 122392,122393 1sxjA 511 16.90 a.80.1.1,c.37.1.20 106081,106082 1gm5A 780 17.11 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1qz9A 416 17.27 c.67.1.3 96621 1oasA 322 18.00 c.79.1.1 35293 1r8eA 278 20.01 a.6.1.3,d.60.1.1 104843,104844 1d2mA 665 20.17 c.37.1.19,c.37.1.19 32417,32418 2q28A 564 20.84 1qpbA 563 21.01 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1fcjA 322 21.02 c.79.1.1 35289 1cl2A 395 21.39 c.67.1.3 34397 2oq1A 254 23.26 d.93.1.1,d.93.1.1 139220,139221 2r6r1 338 24.07 2chgA 226 24.28 1mtzA 293 24.41 c.69.1.7 79467 3cogA 403 25.91 2fq6A 415 26.89 c.67.1.3 133939 8abpA 306 26.95 c.93.1.1 35647 1e5eA 404 28.16 c.67.1.3 59265 1pv9A 348 29.56 c.55.2.1,d.127.1.1 95157,95158 1puiA 210 29.94 c.37.1.8 88292 1gpjA 404 29.98 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1tdj 514 30.19 3bzwA 274 32.91 2p97A 201 33.58 1lfwA 470 33.78 c.56.5.4,d.58.19.1 77942,77943 1jr3A 373 34.62 a.80.1.1,c.37.1.20 63245,63246 2q4aA 330 34.88 b.82.2.8 139839 1khdA 345 38.34 a.46.2.1,c.27.1.1 77400,77401 1j6uA 469 38.58 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1fohA 664 43.54 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 8abp 306 44.69 1ojqA 212 45.43 d.166.1.1 93146 2dxqA 150 46.01 2psdA 318 46.23 1rq2A 382 47.38 c.32.1.1,d.79.2.1 105048,105049 2bm8A 236 47.38 c.66.1.50 128771 2gufA 594 47.68 f.4.3.3 135736 2qalM 117 49.91 3b9pA 297 50.76 1zckA 154 54.56 1knwA 425 55.48 b.49.2.3,c.1.6.1 90969,90970 1m3sA 186 55.73 c.80.1.3 78573 2ihtA 573 55.73 1vkiA 181 56.24 d.116.1.1 108664 1yksA 440 56.83 c.37.1.14,c.37.1.14 123561,123562 1crxA 322 57.41 a.60.9.1,d.163.1.1 18097,42157 1fsyA 358 59.11 e.3.1.1 60016 1vjoA 393 60.72 c.67.1.3 100827 2z4sA 440 61.38 1y4iA 398 62.14 c.67.1.3 122619 1fjgM 126 63.22 a.156.1.1 16293 1qydA 313 64.05 c.2.1.2 96583 1rkuA 206 64.89 c.108.1.11 97627 1b24A 188 65.15 d.95.2.1,d.95.2.1 40573,40574 1fsz 372 65.28 1b8oA 284 65.78 c.56.2.1 33762 1a49A 530 66.39 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2ejaA 338 69.27 2nw0A 189 69.84 2f9sA 151 70.62 c.47.1.10 133168 1xo0A 324 71.46 a.60.9.1,d.163.1.1 115674,115675 1xccA 220 71.89 c.47.1.10 115113 1rhs 296 72.91 1zejA 293 73.31 1mf7A 194 73.37 c.62.1.1 84937 1z6nA 167 75.80 c.47.1.1 124530 2ev1A 222 78.56 1nqeA 594 79.88 f.4.3.3 86027 1st9A 143 81.69 c.47.1.10 98987 2qe8A 343 81.83 1aihA 170 81.95 d.163.1.1 42149 1o4sA 389 82.59 c.67.1.1 86620 3c3yA 237 83.13 1a81A 254 83.16 d.93.1.1,d.93.1.1 40507,40508 1vquA 374 86.02 2o2iA 300 87.31 2p71A 132 88.55 a.39.2.1 139516